Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   ACF2JY_RS07905 Genome accession   NZ_CP172966
Coordinates   1499925..1500692 (+) Length   255 a.a.
NCBI ID   WP_003230055.1    Uniprot ID   A0AAE2SJ05
Organism   Bacillus subtilis strain cel     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 1494925..1505692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF2JY_RS07875 (ACF2JY_07875) pgpH 1495221..1497356 (+) 2136 WP_010886570.1 cyclic-di-AMP phosphodiesterase PgpH -
  ACF2JY_RS07880 (ACF2JY_07880) ybeY 1497357..1497830 (+) 474 WP_003230039.1 rRNA maturation RNase YbeY -
  ACF2JY_RS07885 (ACF2JY_07885) unpK 1497811..1498182 (+) 372 WP_015384119.1 diacylglycerol kinase family protein -
  ACF2JY_RS07890 (ACF2JY_07890) - 1498301..1498711 (+) 411 WP_032722130.1 cytidine deaminase -
  ACF2JY_RS07895 (ACF2JY_07895) era 1498692..1499597 (+) 906 WP_003230051.1 GTPase Era -
  ACF2JY_RS07900 (ACF2JY_07900) yqzL 1499745..1499888 (+) 144 WP_003230053.1 YqzL family protein -
  ACF2JY_RS07905 (ACF2JY_07905) recO 1499925..1500692 (+) 768 WP_003230055.1 DNA repair protein RecO Machinery gene
  ACF2JY_RS07910 (ACF2JY_07910) glyQ 1500989..1501876 (+) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  ACF2JY_RS07915 (ACF2JY_07915) glyS 1501869..1503908 (+) 2040 WP_003230059.1 glycine--tRNA ligase subunit beta -
  ACF2JY_RS07920 (ACF2JY_07920) ccpN 1504041..1504679 (+) 639 WP_003237058.1 transcriptional regulator CcpN -
  ACF2JY_RS07925 (ACF2JY_07925) ppsR 1504705..1505517 (+) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29328.02 Da        Isoelectric Point: 8.3080

>NTDB_id=1069698 ACF2JY_RS07905 WP_003230055.1 1499925..1500692(+) (recO) [Bacillus subtilis strain cel]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYVAELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=1069698 ACF2JY_RS07905 WP_003230055.1 1499925..1500692(+) (recO) [Bacillus subtilis strain cel]
ATGCTGACAAAATGTGAAGGGATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACATTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATGTTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAATCCTTATTTATTTGAATTCATATTAGAATCATTAAAACAGTTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTGAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATTAA
ACCGCAAACGGCAAGGCTGTTAAGGCTCTTTTACTATTTTGATCTGTCGAGACTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment