Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACIJQ5_RS14230 Genome accession   NZ_CP172871
Coordinates   2905555..2906184 (-) Length   209 a.a.
NCBI ID   WP_000839142.1    Uniprot ID   A0A8S7T410
Organism   Escherichia coli strain 23-AB02114     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2900555..2911184
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIJQ5_RS14215 (ACIJQ5_14230) helD 2900797..2902851 (-) 2055 WP_001349949.1 DNA helicase IV -
  ACIJQ5_RS14220 (ACIJQ5_14235) yccF 2902974..2903420 (+) 447 WP_001261235.1 YccF domain-containing protein -
  ACIJQ5_RS14225 (ACIJQ5_14240) yccS 2903430..2905592 (+) 2163 WP_000875023.1 YccS family putative transporter -
  ACIJQ5_RS14230 (ACIJQ5_14245) sxy/tfoX 2905555..2906184 (-) 630 WP_000839142.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ACIJQ5_RS14235 (ACIJQ5_14250) sulA 2906403..2906912 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ACIJQ5_RS14240 (ACIJQ5_14255) ompA 2907269..2908309 (+) 1041 WP_000750416.1 porin OmpA -
  ACIJQ5_RS14245 (ACIJQ5_14260) matP 2908385..2908837 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ACIJQ5_RS14250 (ACIJQ5_14265) ycbZ 2909023..2910783 (+) 1761 WP_000156526.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24093.97 Da        Isoelectric Point: 8.8133

>NTDB_id=1069629 ACIJQ5_RS14230 WP_000839142.1 2905555..2906184(-) (sxy/tfoX) [Escherichia coli strain 23-AB02114]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVCLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1069629 ACIJQ5_RS14230 WP_000839142.1 2905555..2906184(-) (sxy/tfoX) [Escherichia coli strain 23-AB02114]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGTGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment