Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACIHQR_RS33485 Genome accession   NZ_CP172866
Coordinates   8396321..8397682 (+) Length   453 a.a.
NCBI ID   WP_223740559.1    Uniprot ID   -
Organism   Corallococcus coralloides strain KYC2213     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 8391321..8402682
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIHQR_RS33460 (ACIHQR_33460) - 8392393..8392671 (-) 279 WP_223740555.1 hypothetical protein -
  ACIHQR_RS33465 (ACIHQR_33465) bioD 8392787..8393482 (-) 696 WP_404365232.1 dethiobiotin synthase -
  ACIHQR_RS33470 (ACIHQR_33470) bioF 8393472..8394653 (-) 1182 WP_404365234.1 8-amino-7-oxononanoate synthase -
  ACIHQR_RS33475 (ACIHQR_33475) bioB 8394650..8395675 (-) 1026 WP_223740558.1 biotin synthase BioB -
  ACIHQR_RS33480 (ACIHQR_33480) - 8395866..8396135 (-) 270 WP_120597359.1 GlsB/YeaQ/YmgE family stress response membrane protein -
  ACIHQR_RS33485 (ACIHQR_33485) radA 8396321..8397682 (+) 1362 WP_223740559.1 DNA repair protein RadA Machinery gene
  ACIHQR_RS33490 (ACIHQR_33490) - 8397695..8398165 (-) 471 WP_223740560.1 hypothetical protein -
  ACIHQR_RS33495 (ACIHQR_33495) - 8398484..8400202 (-) 1719 WP_404365238.1 hypothetical protein -
  ACIHQR_RS33500 (ACIHQR_33500) - 8400469..8401950 (+) 1482 WP_404365240.1 ATP-binding protein -
  ACIHQR_RS33505 (ACIHQR_33505) - 8401957..8402535 (-) 579 WP_223740563.1 NUDIX hydrolase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48013.24 Da        Isoelectric Point: 7.3489

>NTDB_id=1069591 ACIHQR_RS33485 WP_223740559.1 8396321..8397682(+) (radA) [Corallococcus coralloides strain KYC2213]
MAKAKTHYTCQACGYQTAKWLGKCPDCGAWSSLLEETEAKVDDKRPAWGASGGSSRPVKLQDVTAETEVRRRTGITEFDR
VLGGGVVGGSLVLLGGDPGIGKSTLLLAALDKLSRHGPVLYVSGEESLRQTKMRAERLRVEGDAIHLFAETDADRVLQAA
EALKPQALVVDSIQTMYLPELGNAPGSITQVREVAGRLMAFAKRSGVPTFLVGHVTKEGSIAGPRVLEHMVDTVLYFEGE
RGHPFRLLRAHKNRFGSTNEIGVFEMKGAGLVEVADPSALFLSERPQGKSGSVVTSTLNGTRPLLVEVQALVAPTGYGTA
RRTAIGVDGNRVALLAAVLEKKEEIPLVGCDLFVNVAGGMQLSEPACDLAVCAALVSSLQNRPLDAKTLVLGEVGLAGEV
RAVGQVEPRLAEAAKMGFQRVVLPAGSARRVEATKLQVVGVETLSEALAAMFD

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=1069591 ACIHQR_RS33485 WP_223740559.1 8396321..8397682(+) (radA) [Corallococcus coralloides strain KYC2213]
ATGGCGAAGGCGAAGACGCACTACACCTGTCAGGCCTGCGGCTACCAGACGGCGAAGTGGCTCGGGAAGTGTCCGGACTG
CGGGGCCTGGAGCTCGCTCCTGGAGGAGACCGAAGCGAAGGTGGACGACAAGCGCCCGGCGTGGGGCGCGTCCGGGGGCT
CCTCCCGGCCGGTGAAGCTGCAGGACGTGACGGCGGAGACGGAGGTGCGCCGCCGCACGGGCATCACGGAGTTCGACCGC
GTGCTGGGCGGTGGCGTGGTGGGCGGCTCGCTGGTGCTGCTCGGCGGCGACCCGGGCATCGGCAAGTCCACGCTGCTCCT
GGCGGCGCTGGACAAGCTGTCGCGGCACGGGCCGGTGCTCTACGTGTCGGGTGAAGAGAGCCTGCGGCAGACGAAGATGC
GCGCGGAGCGCCTGCGGGTGGAGGGGGACGCCATCCACCTCTTCGCGGAGACGGACGCGGACCGGGTGCTCCAGGCGGCG
GAGGCGCTCAAGCCGCAGGCGCTGGTGGTGGACTCCATCCAGACCATGTACCTGCCGGAGCTGGGCAACGCGCCGGGCAG
CATCACCCAGGTGCGCGAGGTGGCGGGCCGGCTGATGGCGTTCGCCAAGCGCAGCGGGGTGCCCACGTTCCTGGTGGGGC
ACGTGACGAAGGAGGGCTCCATCGCGGGTCCCCGGGTGCTGGAGCACATGGTGGACACGGTCCTCTACTTCGAGGGCGAG
CGCGGCCACCCGTTCCGCCTGCTGCGCGCGCACAAGAACCGCTTCGGCAGCACCAACGAGATTGGCGTCTTCGAGATGAA
GGGCGCGGGGCTGGTGGAGGTGGCGGACCCGTCCGCGCTGTTCCTCTCCGAGCGCCCGCAGGGCAAGTCCGGCAGCGTGG
TGACGAGCACGCTCAACGGCACCCGTCCGCTGCTGGTGGAGGTGCAGGCGCTGGTGGCGCCCACGGGCTATGGCACGGCG
AGGCGCACGGCGATTGGCGTGGACGGCAACCGCGTGGCGCTGCTGGCGGCGGTGCTGGAGAAGAAGGAGGAGATCCCGCT
GGTGGGCTGCGACCTGTTCGTCAACGTGGCGGGCGGCATGCAGTTGAGCGAACCGGCGTGCGACCTGGCGGTGTGCGCGG
CGCTGGTGAGCAGCCTGCAGAACCGGCCGTTGGACGCGAAGACGCTGGTGCTGGGAGAGGTGGGGCTCGCGGGCGAGGTG
CGCGCGGTGGGCCAGGTGGAGCCGAGGCTCGCGGAGGCCGCGAAGATGGGCTTCCAGCGGGTGGTGCTGCCGGCGGGCAG
CGCGCGGCGCGTGGAGGCGACGAAGCTCCAGGTGGTGGGCGTGGAGACCCTGAGCGAGGCGCTGGCGGCGATGTTCGACT
GA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(351-425)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-33)

AAA domain (AAA_25)

(57-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

52.434

99.779

0.523
  radA Streptococcus mitis NCTC 12261

52.097

100

0.521
  radA Streptococcus pneumoniae Rx1

52.097

100

0.521
  radA Streptococcus pneumoniae D39

52.097

100

0.521
  radA Streptococcus pneumoniae R6

52.097

100

0.521
  radA Streptococcus pneumoniae TIGR4

52.097

100

0.521
  radA Streptococcus mitis SK321

51.876

100

0.519

Multiple sequence alignment