Detailed information NTG0106926

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: AADG46_RS11100
• Genome accession: NZ_AP028804
• Coordinates: 2432969..2433976 (-)
• Length: 335 a.a.
• NCBI ID: WP_000224452.1
• Uniprot ID: A0A085RG68
• Organism: Vibrio cholerae strain VN152
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 2427969..2438976

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AADG46_RS11075 (VNVC001_21030)	rraA	2428544..2429059 (-)	516	WP_000456236.1	ribonuclease E activity regulator RraA	-
AADG46_RS11080 (VNVC001_21040)	-	2429134..2430051 (-)	918	WP_001066162.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
AADG46_RS11085 (VNVC001_21050)	hslU	2430155..2431486 (-)	1332	WP_001293366.1	HslU--HslV peptidase ATPase subunit	-
AADG46_RS11090 (VNVC001_21060)	hslV	2431552..2432109 (-)	558	WP_000208247.1	ATP-dependent protease subunit HslV	-
AADG46_RS11095 (VNVC001_21070)	-	2432246..2432797 (-)	552	WP_001884022.1	SPOR domain-containing protein	-
AADG46_RS11100 (VNVC001_21080)	cytR	2432969..2433976 (-)	1008	WP_000224452.1	DNA-binding transcriptional regulator CytR	Regulator
AADG46_RS11105 (VNVC001_21090)	priA	2434282..2436486 (-)	2205	WP_001247859.1	primosomal protein N'	-
AADG46_RS11110 (VNVC001_21100)	rpmE	2436741..2436959 (+)	219	WP_000643446.1	50S ribosomal protein L31	-
AADG46_RS11115 (VNVC001_21110)	-	2437267..2438544 (+)	1278	WP_001278591.1	malic enzyme-like NAD(P)-binding protein	-
AADG46_RS11120 (VNVC001_21120)	metJ	2438655..2438972 (-)	318	WP_000796267.1	met regulon transcriptional regulator MetJ	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 37018.59 Da
• Isoelectric Point: 7.0759

>NTDB_id=106926 AADG46_RS11100 WP_000224452.1 2432969..2433976(-) (cytR) [Vibrio cholerae strain VN152]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKRRENSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPQHAALCQFRHQGYQQALRRAGITMNPTYCTFGDFTFEAGAKAVRQLLALPEQPTA
IFCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLE
TKLVVRESAAPPSKK

Nucleotide

• Length: 1008 bp

>NTDB_id=106926 AADG46_RS11100 WP_000224452.1 2432969..2433976(-) (cytR) [Vibrio cholerae strain VN152]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCTGGAGTTTCAACCGCGACCGTGTCTCGTGCGTTGATGAATCCAGAGAA
AGTCTCGTCGTCCACTCGTAAACGAGTGGAAGAGGCCGTGCTGGAAGCGGGTTATTCACCCAATTCTTTGGCGCGCAATT
TGCGCCGTAATGAATCGAAAACCATCGTTGCTATCGTGCCAGATATCTGTGATCCCTACTTTTCTGAGATCATTCGCGGT
ATTGAAGATGCCGCGATGGAGCACGGTTATCTGGTGCTGTTGGGGGATAGTGGTCAACAGAAGCGTCGGGAGAACTCGTT
CGTTAATCTGGTGTTTACCAAACAGGCAGACGGTATGTTGCTGCTGGGGACAGATTTGCCGTTTGATGTGAGTAAACCTG
AGCAGAAAAACCTACCGCCTATGGTGATGGCGTGTGAATTTGCGCCAGAGCTGGAATTGCCAACGGTACACATTGATAAC
CTGACCTCGGCATTTGAGGCGGTAAACTATCTCACTCAGCTTGGGCACAAACGGATTGCGCAGATCTCAGGTCCACAACA
TGCTGCGCTGTGCCAATTCCGTCATCAAGGCTATCAACAGGCGCTGCGTCGTGCTGGCATCACCATGAACCCGACTTACT
GCACTTTTGGCGATTTCACTTTTGAAGCCGGGGCAAAAGCGGTGCGTCAGCTGTTGGCATTGCCTGAGCAGCCGACCGCG
ATTTTCTGTCATAACGATACGATGGCGATTGGCGCAATTCAGGAAGCGAAGCGACTTGGCTTGCGCGTACCGCAAGATCT
CTCTGTGGTCGGTTTTGACGATATTCAGTTTGCCCAGTACTGCGATCCCCCATTAACGACCATTTCGCAGCCGCGTTATG
AGATTGGCCGTCAAGCCATGCTGATGATGCTCGAATTATTGCGCGGACATGATGTGCGTGCTGGATCGCGTCTTTTGGAG
ACCAAGTTGGTCGTGCGTGAGAGTGCTGCGCCGCCAAGCAAGAAGTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

3D structure

• AlphaFold DB: A0A085RG68

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio cholerae C6706	100	100	1
cytR	Vibrio parahaemolyticus RIMD 2210633	90.719	99.701	0.904