Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   ACF1RT_RS09620 Genome accession   NZ_CP172847
Coordinates   1929352..1930065 (+) Length   237 a.a.
NCBI ID   WP_019313449.1    Uniprot ID   -
Organism   Streptococcus mutans strain DPC6143     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1924352..1935065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF1RT_RS09605 (ACF1RT_09605) - 1924953..1925542 (+) 590 Protein_1841 transposase -
  ACF1RT_RS09610 (ACF1RT_09610) treC 1925560..1927185 (-) 1626 WP_106006837.1 alpha,alpha-phosphotrehalase -
  ACF1RT_RS09615 (ACF1RT_09615) treP 1927211..1929178 (-) 1968 WP_226711264.1 PTS system trehalose-specific EIIBC component -
  ACF1RT_RS09620 (ACF1RT_09620) treR 1929352..1930065 (+) 714 WP_019313449.1 trehalose operon repressor Regulator
  ACF1RT_RS09625 (ACF1RT_09625) dexA 1930411..1932963 (-) 2553 WP_400260343.1 dextranase DexA -
  ACF1RT_RS09630 (ACF1RT_09630) dtd 1933448..1933894 (-) 447 WP_002266260.1 D-aminoacyl-tRNA deacylase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27806.23 Da        Isoelectric Point: 9.9268

>NTDB_id=1069117 ACF1RT_RS09620 WP_019313449.1 1929352..1930065(+) (treR) [Streptococcus mutans strain DPC6143]
MKKYKIIFKKLEEDILKGHYQMGDYLPPEMELSQIYASSRDTVRKALQLLTKAGFIKTVQGRGSQIIKRERINFPVSQLT
SYQELVKQLQMNVKTNVIAIDKLIIDEKLTKLTGFENKGLVWRITRQRVIDGVASILDTDYLDKALIPHMTREIAEHSIY
DYLENQLKLDIAYAQKIITIDQVSQKDKILLDLDSENHVVSVKSKVYLSNQQQFQFTESRHKLEKFRFVDFARRHRD

Nucleotide


Download         Length: 714 bp        

>NTDB_id=1069117 ACF1RT_RS09620 WP_019313449.1 1929352..1930065(+) (treR) [Streptococcus mutans strain DPC6143]
ATGAAAAAATATAAAATTATTTTTAAAAAACTAGAAGAAGATATTCTCAAAGGACACTATCAAATGGGTGACTATCTTCC
CCCTGAAATGGAACTTAGCCAGATCTATGCCAGCAGCCGAGATACTGTTAGAAAGGCTTTACAGCTCTTGACTAAGGCAG
GTTTTATTAAAACAGTACAGGGAAGAGGATCCCAAATTATCAAGCGTGAGCGCATTAACTTTCCTGTTTCTCAACTAACC
AGCTATCAAGAATTGGTTAAACAATTGCAGATGAATGTCAAGACAAATGTTATTGCTATTGATAAACTGATTATTGATGA
GAAACTCACCAAACTAACCGGTTTTGAAAATAAAGGTCTTGTCTGGCGCATCACAAGACAGCGCGTCATAGACGGCGTTG
CTTCCATTTTAGATACGGATTATTTGGATAAAGCATTGATTCCTCATATGACCAGAGAAATCGCTGAACATTCTATCTAT
GATTATCTTGAAAATCAACTTAAGCTGGACATTGCCTATGCTCAAAAGATTATTACCATAGATCAAGTATCGCAAAAAGA
TAAAATTTTGCTTGATTTGGATTCTGAAAATCATGTCGTTTCGGTTAAATCTAAAGTTTATCTCAGTAATCAGCAGCAAT
TTCAATTCACTGAAAGCCGGCACAAACTGGAAAAGTTCCGTTTTGTTGACTTTGCCAGACGGCATCGTGATTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(4-65)

UTRA domain (UTRA)

(90-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

98.734

100

0.987

Multiple sequence alignment