Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB/nlmE   Type   Regulator
Locus tag   ACF1RT_RS08920 Genome accession   NZ_CP172847
Coordinates   1798514..1799416 (-) Length   300 a.a.
NCBI ID   WP_002263524.1    Uniprot ID   A0AAX1K0S8
Organism   Streptococcus mutans strain DPC6143     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1793514..1804416
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF1RT_RS08910 (ACF1RT_08910) ulaG 1794821..1795912 (-) 1092 WP_002263526.1 L-ascorbate 6-phosphate lactonase -
  ACF1RT_RS08915 (ACF1RT_08915) - 1796490..1798157 (-) 1668 WP_002293785.1 transcription antiterminator -
  ACF1RT_RS08920 (ACF1RT_08920) comB/nlmE 1798514..1799416 (-) 903 WP_002263524.1 HlyD family efflux transporter periplasmic adaptor subunit Regulator
  ACF1RT_RS08925 (ACF1RT_08925) comA/nlmT 1799430..1801712 (-) 2283 WP_063331041.1 peptide cleavage/export ABC transporter Regulator
  ACF1RT_RS08930 (ACF1RT_08930) - 1802975..1803253 (-) 279 WP_002310898.1 hypothetical protein -
  ACF1RT_RS08935 (ACF1RT_08935) - 1803491..1803700 (-) 210 WP_002263944.1 hypothetical protein -
  ACF1RT_RS08940 (ACF1RT_08940) - 1804185..1804346 (-) 162 WP_162470319.1 hypothetical protein -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 34116.49 Da        Isoelectric Point: 10.4213

>NTDB_id=1069111 ACF1RT_RS08920 WP_002263524.1 1798514..1799416(-) (comB/nlmE) [Streptococcus mutans strain DPC6143]
MDPKFLQSAEFYRRRYHNFATLLIVPLVCLIIFLVIFLCFAKKEITVISTGEVAPTKVVDVIQSYSDSSIIKNNLDNNAA
VEKGDVLIEYSENASPNRQTEQKNIIKERQKREEKEKKKHQKSKKKKKSKSKKASKDKKKKSKDKESSSDDENETKKVSI
FASEDGIIHTNPKYDGANIIPKQTEIAQIYPDIQKTRKVLITYYASSDDVVSMKKGQTARLSLEKKGNDKVVIEGKINNV
ASSATTTKKGNLFKVTAKVKVSKKNSKLIKYGMTGKTVTVIDKKTYFDYFKDKLLHKMDN

Nucleotide


Download         Length: 903 bp        

>NTDB_id=1069111 ACF1RT_RS08920 WP_002263524.1 1798514..1799416(-) (comB/nlmE) [Streptococcus mutans strain DPC6143]
ATGGATCCTAAATTTTTACAAAGTGCAGAATTTTATAGGAGACGCTATCATAATTTTGCGACATTATTAATTGTTCCGTT
GGTCTGCTTGATTATCTTCTTGGTCATATTCCTTTGTTTTGCTAAAAAAGAAATTACAGTGATTTCTACTGGTGAAGTTG
CACCAACAAAGGTTGTAGATGTTATCCAATCTTACAGTGACAGTTCAATCATTAAAAATAATTTAGATAATAATGCAGCT
GTTGAGAAGGGAGACGTTTTAATTGAATATTCAGAAAATGCCAGTCCAAACCGTCAGACTGAACAAAAGAATATTATAAA
AGAAAGACAAAAACGAGAAGAGAAGGAAAAGAAAAAACACCAAAAGAGCAAGAAAAAGAAGAAGTCTAAGAGCAAGAAAG
CTTCCAAAGATAAGAAAAAGAAATCGAAAGACAAGGAAAGCAGCTCTGACGATGAAAATGAGACAAAAAAGGTTTCGATT
TTTGCTTCAGAAGATGGTATTATTCATACCAATCCCAAATATGATGGTGCCAATATTATTCCGAAGCAAACCGAGATTGC
TCAAATCTATCCTGATATTCAAAAAACAAGAAAAGTGTTAATCACCTATTATGCTTCTTCTGATGATGTTGTTTCTATGA
AAAAGGGGCAAACCGCTCGTCTTTCCTTGGAAAAAAAGGGAAATGACAAGGTTGTTATTGAAGGAAAAATTAACAATGTC
GCTTCATCAGCAACTACTACTAAAAAAGGAAATCTCTTTAAGGTTACTGCCAAAGTAAAGGTTTCTAAGAAAAATAGCAA
ACTCATCAAGTATGGTATGACAGGCAAGACAGTCACTGTCATTGATAAAAAGACTTATTTTGATTATTTCAAAGATAAAT
TACTGCATAAAATGGATAATTAG

Domains

Predicted by InterproScan.

HlyD family secretion protein (HlyD_3)

(160-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB/nlmE Streptococcus mutans UA159

100

100

1

Multiple sequence alignment