Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACF1RT_RS08660 Genome accession   NZ_CP172847
Coordinates   1731282..1732682 (-) Length   466 a.a.
NCBI ID   WP_002277593.1    Uniprot ID   -
Organism   Streptococcus mutans strain DPC6143     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1726282..1737682
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACF1RT_RS08635 (ACF1RT_08635) - 1726797..1727345 (-) 549 WP_002274155.1 hypothetical protein -
  ACF1RT_RS08640 (ACF1RT_08640) - 1727412..1727936 (-) 525 WP_002268868.1 transcription repressor NadR -
  ACF1RT_RS08645 (ACF1RT_08645) gltX 1728052..1729509 (-) 1458 WP_019313068.1 glutamate--tRNA ligase -
  ACF1RT_RS08650 (ACF1RT_08650) - 1729796..1730509 (-) 714 WP_002262518.1 TIGR00266 family protein -
  ACF1RT_RS08655 (ACF1RT_08655) - 1730698..1731192 (-) 495 WP_002262519.1 carbonic anhydrase -
  ACF1RT_RS08660 (ACF1RT_08660) radA 1731282..1732682 (-) 1401 WP_002277593.1 DNA repair protein RadA Machinery gene
  ACF1RT_RS08665 (ACF1RT_08665) - 1732640..1733110 (-) 471 WP_002270349.1 cysteine hydrolase family protein -
  ACF1RT_RS08670 (ACF1RT_08670) - 1733120..1733563 (-) 444 WP_002294168.1 dUTP diphosphatase -
  ACF1RT_RS08675 (ACF1RT_08675) - 1733887..1734906 (+) 1020 WP_002294169.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  ACF1RT_RS08680 (ACF1RT_08680) galU 1734908..1735828 (+) 921 WP_002262524.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  ACF1RT_RS08685 (ACF1RT_08685) - 1735850..1736521 (-) 672 WP_002265013.1 rhomboid family intramembrane serine protease -
  ACF1RT_RS08690 (ACF1RT_08690) - 1736508..1737044 (-) 537 WP_002268013.1 5-formyltetrahydrofolate cyclo-ligase -

Sequence

Protein


Download         Length: 466 a.a.        Molecular weight: 51121.64 Da        Isoelectric Point: 7.1359

>NTDB_id=1069110 ACF1RT_RS08660 WP_002277593.1 1731282..1732682(-) (radA) [Streptococcus mutans strain DPC6143]
MADCWNSNERRITIAKKKTTFVCQECGYNSPKYLGRCPNCSSWSSFVEEVEVAEVKNARVSLTGEKTRPVKLNQVTSSQA
TRVKTNMEEFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLANKGTVFYVSGEESAEQIKLRSERLGDIDNEFYLY
AETNMQSIRAEIEKIQPDFLIIDSIQTVMSPEISSVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLE
HMVDTVLYFEGERQHTFRILRAVKNRFGSTNEIGIFEMRSGGLVEVLNPSQVFLEERLDGATGSAIVVTMEGTRPILAEV
QALVTPTVFGNAKRTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVRLDEPAIDLAVAVAIASSYKEKPTNPQE
CYIGEIGLTGEIRRVNRIEQRLNEASKLGFTKIFVPKNSLSGLTIPQGIQVIGVTTVSEVLKKVFN

Nucleotide


Download         Length: 1401 bp        

>NTDB_id=1069110 ACF1RT_RS08660 WP_002277593.1 1731282..1732682(-) (radA) [Streptococcus mutans strain DPC6143]
ATGGCAGATTGCTGGAATAGTAACGAAAGGAGAATTACCATAGCTAAGAAAAAAACAACTTTTGTCTGTCAAGAGTGCGG
CTATAATTCGCCCAAGTATCTGGGACGTTGTCCTAATTGCTCGTCTTGGTCTTCTTTTGTTGAAGAGGTTGAAGTTGCTG
AGGTTAAAAATGCTCGCGTTTCACTGACAGGTGAGAAGACACGGCCAGTCAAGTTAAATCAGGTCACCTCCAGCCAAGCC
ACTAGAGTCAAGACCAATATGGAAGAATTCAACCGTGTTTTGGGCGGTGGTGTTGTACCAGGCAGTCTGGTTCTTATCGG
CGGCGATCCCGGCATCGGGAAATCGACCCTACTTTTGCAAGTTTCAACACAATTAGCCAATAAAGGAACTGTTTTTTATG
TTTCTGGTGAAGAATCAGCGGAGCAGATCAAGTTGCGTAGCGAGCGTCTCGGTGATATTGACAATGAGTTTTATCTCTAT
GCTGAAACTAATATGCAAAGTATTCGTGCTGAGATTGAAAAAATCCAGCCTGATTTTTTAATTATTGATTCTATTCAAAC
AGTGATGAGTCCTGAAATTTCCAGTGTTCAAGGTTCTGTTTCTCAGGTGCGTGAAGTGACAGCAGAATTAATGCAATTAG
CTAAAACCAATAACATTGCGACTTTTATTGTTGGACATGTGACTAAAGAAGGAACCTTAGCTGGACCGCGAATGTTAGAA
CACATGGTGGACACTGTGCTCTACTTTGAAGGCGAGCGGCAGCATACTTTTCGTATCTTACGAGCCGTTAAAAATCGCTT
TGGTTCTACTAATGAGATTGGTATTTTTGAAATGAGGTCGGGTGGTTTGGTTGAGGTTTTGAATCCCAGCCAAGTTTTTT
TAGAAGAGCGTCTAGATGGAGCAACAGGCTCAGCTATTGTTGTTACCATGGAAGGAACACGACCTATTTTAGCGGAAGTA
CAAGCCCTAGTAACACCAACTGTTTTTGGTAATGCTAAACGGACAACAACAGGACTGGACTTTAATCGTGTTAGTTTGAT
TATGGCGGTTTTGGAGAAGCGCTGCGGACTTTTATTGCAAAATCAAGATGCCTATCTCAAATCAGCTGGTGGTGTGCGCT
TAGATGAGCCTGCTATTGATTTAGCGGTTGCGGTAGCCATTGCTTCCAGTTATAAGGAAAAGCCAACCAACCCTCAAGAA
TGTTATATTGGTGAAATTGGTTTGACAGGTGAAATTCGTCGTGTTAATCGTATCGAACAACGTCTCAATGAAGCTAGTAA
GCTCGGTTTTACCAAGATTTTTGTACCCAAAAATTCCCTGTCAGGTTTAACGATTCCACAAGGTATTCAGGTAATTGGTG
TGACAACTGTTAGTGAAGTCTTAAAAAAGGTATTTAATTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(77-231)

Subunit ChlI of Mg-chelatase (ChlI)

(375-438)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(21-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

89.381

96.996

0.867
  radA Streptococcus pneumoniae D39

89.381

96.996

0.867
  radA Streptococcus pneumoniae R6

89.381

96.996

0.867
  radA Streptococcus pneumoniae TIGR4

89.381

96.996

0.867
  radA Streptococcus mitis SK321

89.381

96.996

0.867
  radA Streptococcus mitis NCTC 12261

89.159

96.996

0.865
  radA Bacillus subtilis subsp. subtilis str. 168

62.031

97.21

0.603

Multiple sequence alignment