Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   AADG46_RS04495 Genome accession   NZ_AP028804
Coordinates   955998..957422 (-) Length   474 a.a.
NCBI ID   WP_231795691.1    Uniprot ID   -
Organism   Vibrio cholerae strain VN152     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 950998..962422
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AADG46_RS04470 (VNVC001_08230) purT 951507..952682 (-) 1176 WP_000468083.1 phosphoribosylglycinamide formyltransferase 2 -
  AADG46_RS04475 (VNVC001_08240) - 952836..953711 (-) 876 WP_340701947.1 AEC family transporter -
  AADG46_RS04480 (VNVC001_08250) cdd 953870..954757 (-) 888 WP_001245900.1 cytidine deaminase -
  AADG46_RS04485 (VNVC001_08260) - 954927..955601 (-) 675 WP_000266239.1 LrgB family protein -
  AADG46_RS04490 (VNVC001_08270) - 955592..955966 (-) 375 WP_001881007.1 CidA/LrgA family protein -
  AADG46_RS04495 (VNVC001_08280) sbcB 955998..957422 (-) 1425 WP_231795691.1 exodeoxyribonuclease I Machinery gene
  AADG46_RS04500 (VNVC001_08290) - 957566..958939 (-) 1374 WP_340701948.1 L-cystine transporter -
  AADG46_RS04505 (VNVC001_08300) msrB 959285..959731 (+) 447 WP_000935882.1 peptide-methionine (R)-S-oxide reductase MsrB -
  AADG46_RS04510 (VNVC001_08310) cobT 960342..961367 (+) 1026 WP_000887084.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  AADG46_RS04515 (VNVC001_08320) - 961367..962152 (+) 786 WP_340701949.1 adenosylcobinamide-GDP ribazoletransferase -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54514.97 Da        Isoelectric Point: 6.2572

>NTDB_id=106909 AADG46_RS04495 WP_231795691.1 955998..957422(-) (sbcB) [Vibrio cholerae strain VN152]
MQQEHQPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITGITPQKANSQGLAEP
EFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQHGNSRWDLLDVLRACHALRPEGIEWPENDDGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHY
TSWIVPIAWHPTNQNAVIVVDLGKDPKPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKCPILAPAKTLTAENAQ
KIGIAREQCLAHLNVIRQHPEIREKLVTVFSQEREFNQESDVDSQLYAGFFSPADRAAMEIIRTTTPENLGSLAIRVADK
RIEPLLFRYRARHYPHTLTDAEQRRWAAHCRDYFERNLEGYMLNLENLVHEHQADPKKMAILKSVYHYVEKLAC

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=106909 AADG46_RS04495 WP_231795691.1 955998..957422(-) (sbcB) [Vibrio cholerae strain VN152]
ATGCAGCAAGAACACCAGCCCACATTCTTCTTCTTTGACTACGAGACTTGGGGAGTCAATCCCGCCAAAGATCGTCCTAG
TCAGTTTGCGGGTGTGCGTACCGATATGGACTTCAACATCATCGGTGAGCCTTTGGTAATTTACTGTCAGCTGCCCAACG
ACTATTTGCCCGCCCCTGAGGCCGCATTGATCACAGGGATCACCCCTCAAAAAGCCAATAGCCAAGGTCTCGCGGAGCCC
GAATTTATCGCGCGTATTCATGCAGAACTCTCCACACCAAACACCACTAGCCTTGGCTATAACAGCATACGTTTTGATGA
TGAAGTGACGCGCTACACCTGCTATCGCAACTTTATCGACCCCTATGCTTGGAGCTGGCAACACGGCAATTCCCGTTGGG
ATCTGCTGGATGTGCTTCGCGCGTGTCATGCTTTGCGTCCTGAAGGTATCGAGTGGCCGGAAAATGATGACGGCTTCACC
AGCTTTAAACTGGAACATCTTTCTGTTGCCAACGGCATTGAGCACAGCAACGCGCACGATGCGATGGCCGATGTGATTGC
CACCATTGAACTGGCGAAAAAAGTCAAAGCCGCGCAGCCGAAATTGTTCGACTACTTCTTCACTATGCGCCACAAACGCA
AGCTGACAGAACTGATTGATATTGTGAACCAAACTCCGCTGATGCATGTTTCTGGCATGCTTGGGCGTGAGCGCCACTAC
ACCAGCTGGATTGTGCCGATTGCTTGGCATCCGACCAATCAAAATGCGGTGATTGTGGTGGATTTGGGTAAAGACCCTAA
GCCGCTGCTGGAGCTCGATGCCGAAACGCTGCAAGCACGTCTCTATACGCGGTATGAAGACCTAGCGCCGGATGAGCTAC
CAGTACCCGTGAAATTGGTGCATCTCAATAAATGCCCCATTCTCGCTCCGGCCAAAACCTTGACCGCAGAAAATGCACAA
AAGATTGGTATTGCCCGCGAACAGTGTCTCGCGCACTTGAATGTGATTCGTCAACATCCCGAGATTCGTGAAAAGCTGGT
GACGGTATTTAGCCAAGAGCGCGAGTTTAACCAAGAGAGTGATGTGGATAGCCAACTCTATGCCGGCTTTTTCTCCCCAG
CCGATCGCGCGGCGATGGAGATCATCCGCACCACTACACCGGAGAATCTGGGCAGCTTAGCGATCCGGGTGGCCGATAAG
CGCATTGAACCACTGCTGTTTCGTTATCGTGCGCGCCATTATCCCCATACCTTAACCGATGCCGAGCAACGCCGCTGGGC
AGCGCATTGCCGTGACTATTTCGAGCGCAATCTAGAAGGTTATATGTTGAATTTGGAAAATCTGGTGCATGAACATCAAG
CTGATCCAAAGAAAATGGCGATTTTAAAATCCGTCTACCATTACGTGGAAAAACTCGCTTGCTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-470)

Exonuclease (RNase_T)

(11-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

98.734

100

0.987

Multiple sequence alignment