Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AADG46_RS01385 Genome accession   NZ_AP028804
Coordinates   266814..267332 (+) Length   172 a.a.
NCBI ID   WP_001130227.1    Uniprot ID   -
Organism   Vibrio cholerae strain VN152     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 261814..272332
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AADG46_RS01375 (VNVC001_02220) - 262224..265079 (+) 2856 WP_340701883.1 pitrilysin family protein -
  AADG46_RS01380 (VNVC001_02230) gshA 265191..266765 (+) 1575 WP_267747650.1 glutamate--cysteine ligase -
  AADG46_RS01385 (VNVC001_02240) luxS 266814..267332 (+) 519 WP_001130227.1 S-ribosylhomocysteine lyase Regulator
  AADG46_RS01390 (VNVC001_02250) - 267402..268682 (-) 1281 WP_138040143.1 HlyC/CorC family transporter -
  AADG46_RS01395 (VNVC001_02260) - 268765..269559 (-) 795 WP_000369278.1 inner membrane protein YpjD -
  AADG46_RS01400 (VNVC001_02270) ffh 269772..271157 (+) 1386 WP_114708661.1 signal recognition particle protein -
  AADG46_RS01405 (VNVC001_02280) rpsP 271393..271641 (+) 249 WP_000256449.1 30S ribosomal protein S16 -
  AADG46_RS01410 (VNVC001_02290) rimM 271669..272223 (+) 555 WP_000061906.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19080.90 Da        Isoelectric Point: 5.2199

>NTDB_id=106901 AADG46_RS01385 WP_001130227.1 266814..267332(+) (luxS) [Vibrio cholerae strain VN152]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTMPNKDILSERGIHTLEHLYAGFMRNHLNGSQVEIIDISP
MGCRTGFYMSLIGAPTEQQVAQAWLAAMQDVLKVESQEQIPELNEYQCGTAAMHSLEEAKAIAKNVIAAGISVNRNDELA
LPESMLNELKVH

Nucleotide


Download         Length: 519 bp        

>NTDB_id=106901 AADG46_RS01385 WP_001130227.1 266814..267332(+) (luxS) [Vibrio cholerae strain VN152]
ATGCCATTATTAGACAGTTTTACCGTCGATCATACCCGTATGAATGCACCGGCGGTGCGTGTTGCCAAAACCATGCAAAC
CCCAAAAGGGGATACGATTACCGTATTTGATTTGCGTTTTACTATGCCAAACAAAGATATCTTGTCTGAGCGCGGTATCC
ATACTCTAGAGCATCTCTACGCGGGCTTTATGCGCAATCACCTTAACGGCAGCCAAGTGGAGATCATCGATATTTCACCA
ATGGGTTGCCGTACAGGTTTCTACATGAGCTTGATTGGTGCGCCGACAGAACAGCAAGTGGCACAAGCATGGCTAGCCGC
AATGCAAGATGTGTTGAAAGTTGAAAGCCAAGAGCAAATTCCTGAGCTGAATGAGTACCAGTGCGGCACTGCGGCGATGC
ACTCGCTCGAAGAAGCCAAAGCGATTGCGAAAAACGTGATTGCGGCAGGCATCTCGGTTAACCGTAACGATGAGTTGGCG
CTGCCTGAATCTATGCTCAATGAGCTGAAGGTTCACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

100

100

1

Multiple sequence alignment