Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACIA66_RS04825 Genome accession   NZ_CP172819
Coordinates   1011973..1012602 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain BS-04     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1006973..1017602
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIA66_RS04805 ycbZ 1007363..1009123 (-) 1761 WP_000156526.1 Lon protease family protein -
  ACIA66_RS04810 matP 1009309..1009761 (+) 453 WP_000877158.1 macrodomain Ter protein MatP -
  ACIA66_RS04815 ompA 1009836..1010888 (-) 1053 WP_000750419.1 porin OmpA -
  ACIA66_RS04820 sulA 1011245..1011754 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ACIA66_RS04825 sxy/tfoX 1011973..1012602 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ACIA66_RS04830 yccS 1012565..1014727 (-) 2163 WP_000875044.1 YccS family putative transporter -
  ACIA66_RS04835 yccF 1014737..1015183 (-) 447 WP_001261235.1 YccF domain-containing protein -
  ACIA66_RS04840 helD 1015306..1017360 (+) 2055 WP_001297106.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1069003 ACIA66_RS04825 WP_000839153.1 1011973..1012602(+) (sxy/tfoX) [Escherichia coli strain BS-04]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1069003 ACIA66_RS04825 WP_000839153.1 1011973..1012602(+) (sxy/tfoX) [Escherichia coli strain BS-04]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGCTCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment