Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACIA68_RS04880 Genome accession   NZ_CP172818
Coordinates   1009832..1010461 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain HS-02     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1004832..1015461
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIA68_RS04860 ycbZ 1005232..1006992 (-) 1761 WP_000156473.1 Lon protease family protein -
  ACIA68_RS04865 matP 1007178..1007630 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ACIA68_RS04870 ompA 1007707..1008747 (-) 1041 WP_022645481.1 porin OmpA -
  ACIA68_RS04875 sulA 1009104..1009613 (-) 510 WP_000288704.1 SOS-induced cell division inhibitor SulA -
  ACIA68_RS04880 sxy/tfoX 1009832..1010461 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ACIA68_RS04885 yccS 1010424..1012586 (-) 2163 WP_072258314.1 YccS family putative transporter -
  ACIA68_RS04890 yccF 1012596..1013042 (-) 447 WP_001261235.1 YccF domain-containing protein -
  ACIA68_RS04895 helD 1013165..1015219 (+) 2055 WP_400165324.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1068981 ACIA68_RS04880 WP_000839153.1 1009832..1010461(+) (sxy/tfoX) [Escherichia coli strain HS-02]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1068981 ACIA68_RS04880 WP_000839153.1 1009832..1010461(+) (sxy/tfoX) [Escherichia coli strain HS-02]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTTTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTAGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment