Detailed information
Bioinformatically predicted
Overview
| Name | rpoS | Type | Regulator |
| Locus tag | AADG46_RS01245 | Genome accession | NZ_AP028804 |
| Coordinates | 239840..240847 (+) | Length | 335 a.a. |
| NCBI ID | WP_000116735.1 | Uniprot ID | A0A085SEX1 |
| Organism | Vibrio cholerae strain VN152 | ||
| Function | regulation of chitinases (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 202726..251460 | 239840..240847 | within | 0 |
Gene organization within MGE regions
Location: 202726..251460
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AADG46_RS01040 (VNVC001_01640) | - | 202726..204486 (-) | 1761 | WP_138040262.1 | GNAT family N-acyltransferase | - |
| AADG46_RS01045 (VNVC001_01650) | - | 205270..206106 (-) | 837 | WP_217266213.1 | hypothetical protein | - |
| AADG46_RS01050 (VNVC001_01660) | - | 206621..207301 (+) | 681 | WP_148511521.1 | inovirus Gp2 family protein | - |
| AADG46_RS01055 (VNVC001_01670) | - | 207363..208037 (+) | 675 | WP_222729965.1 | inovirus Gp2 family protein | - |
| AADG46_RS01060 (VNVC001_01680) | - | 208091..208690 (+) | 600 | WP_222729967.1 | inovirus Gp2 family protein | - |
| AADG46_RS01065 (VNVC001_01690) | - | 208759..208959 (+) | 201 | WP_001211742.1 | AlpA family transcriptional regulator | - |
| AADG46_RS01070 (VNVC001_01700) | - | 209042..209488 (+) | 447 | WP_029827289.1 | ribonuclease HI | - |
| AADG46_RS01075 (VNVC001_01710) | - | 209822..212389 (+) | 2568 | WP_029827290.1 | hypothetical protein | - |
| AADG46_RS01080 (VNVC001_01720) | - | 212409..214202 (+) | 1794 | WP_029827291.1 | hypothetical protein | - |
| AADG46_RS01085 (VNVC001_01730) | - | 214377..214604 (-) | 228 | WP_032477046.1 | hypothetical protein | - |
| AADG46_RS01090 (VNVC001_01740) | - | 214652..215020 (-) | 369 | WP_053037329.1 | hypothetical protein | - |
| AADG46_RS01095 (VNVC001_01750) | - | 215051..215785 (-) | 735 | WP_222729970.1 | transcriptional regulator | - |
| AADG46_RS01100 (VNVC001_01760) | - | 216104..216547 (-) | 444 | WP_123162468.1 | DUF2787 domain-containing protein | - |
| AADG46_RS01105 (VNVC001_01770) | - | 216598..217035 (-) | 438 | WP_197035685.1 | DUF2787 domain-containing protein | - |
| AADG46_RS01110 (VNVC001_01780) | radC | 217032..217505 (-) | 474 | WP_032477053.1 | DNA repair protein RadC | - |
| AADG46_RS01115 (VNVC001_01790) | - | 217777..218040 (+) | 264 | WP_032477054.1 | hypothetical protein | - |
| AADG46_RS01120 (VNVC001_01800) | - | 218037..219266 (+) | 1230 | WP_029809306.1 | ImmA/IrrE family metallo-endopeptidase | - |
| AADG46_RS01125 (VNVC001_01810) | - | 219279..220436 (+) | 1158 | WP_050503360.1 | beta family protein | - |
| AADG46_RS01130 (VNVC001_01820) | - | 220709..221728 (+) | 1020 | WP_032477056.1 | hypothetical protein | - |
| AADG46_RS01135 (VNVC001_01830) | - | 221730..222050 (+) | 321 | WP_032477057.1 | STAS-like domain-containing protein | - |
| AADG46_RS01140 (VNVC001_01840) | - | 222059..222592 (+) | 534 | WP_148522925.1 | hypothetical protein | - |
| AADG46_RS01145 | - | 222778..223755 (-) | 978 | WP_001889101.1 | IS481-like element ISVch1 family transposase | - |
| AADG46_RS01150 (VNVC001_01860) | - | 223886..225127 (-) | 1242 | WP_032477059.1 | integrase domain-containing protein | - |
| AADG46_RS01160 (VNVC001_01870) | rpoD | 225513..227390 (-) | 1878 | WP_000372618.1 | RNA polymerase sigma factor RpoD | - |
| AADG46_RS01165 (VNVC001_01880) | dnaG | 227489..229252 (-) | 1764 | WP_019829693.1 | DNA primase | - |
| AADG46_RS01170 (VNVC001_01890) | - | 229342..229785 (-) | 444 | WP_001173893.1 | GatB/YqeY domain-containing protein | - |
| AADG46_RS01175 (VNVC001_01900) | rpsU | 229815..230030 (-) | 216 | WP_001145625.1 | 30S ribosomal protein S21 | - |
| AADG46_RS01180 (VNVC001_01910) | tsaD | 230271..231290 (+) | 1020 | WP_001220125.1 | tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD | - |
| AADG46_RS01185 (VNVC001_01920) | - | 231444..232256 (+) | 813 | WP_001885690.1 | alpha/beta fold hydrolase | - |
| AADG46_RS01190 (VNVC001_01930) | plsY | 232305..232931 (-) | 627 | WP_000188020.1 | glycerol-3-phosphate 1-O-acyltransferase PlsY | - |
| AADG46_RS01195 (VNVC001_01940) | folB | 233120..233473 (+) | 354 | WP_162797334.1 | bifunctional dihydroneopterin aldolase/7,8-dihydroneopterin epimerase | - |
| AADG46_RS01200 (VNVC001_01950) | folK | 233470..233976 (+) | 507 | WP_000627006.1 | 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase | - |
| AADG46_RS01205 (VNVC001_01960) | - | 233973..234776 (+) | 804 | WP_000119813.1 | undecaprenyl-diphosphate phosphatase | - |
| AADG46_RS01210 (VNVC001_01970) | ftsB | 234891..235175 (+) | 285 | WP_001263189.1 | cell division protein FtsB | - |
| AADG46_RS01215 (VNVC001_01980) | ispD | 235172..235870 (+) | 699 | WP_001897958.1 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | - |
| AADG46_RS01220 (VNVC001_01990) | ispF | 235867..236343 (+) | 477 | WP_000619207.1 | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | - |
| AADG46_RS01225 (VNVC001_02000) | truD | 236373..237458 (+) | 1086 | WP_044126956.1 | tRNA pseudouridine(13) synthase TruD | - |
| AADG46_RS01230 (VNVC001_02010) | surE | 237460..238212 (+) | 753 | WP_000698379.1 | 5'/3'-nucleotidase SurE | - |
| AADG46_RS01235 (VNVC001_02020) | - | 238205..238831 (+) | 627 | WP_148528074.1 | protein-L-isoaspartate(D-aspartate) O-methyltransferase | - |
| AADG46_RS01240 (VNVC001_02030) | nlpD | 238831..239766 (+) | 936 | WP_000177561.1 | murein hydrolase activator NlpD | - |
| AADG46_RS01245 (VNVC001_02040) | rpoS | 239840..240847 (+) | 1008 | WP_000116735.1 | RNA polymerase sigma factor RpoS | Regulator |
| AADG46_RS01250 (VNVC001_02050) | mutS | 240941..243529 (-) | 2589 | WP_340701881.1 | DNA mismatch repair protein MutS | - |
| AADG46_RS01255 (VNVC001_02060) | cysM | 243797..244684 (-) | 888 | WP_076025805.1 | cysteine synthase CysM | - |
| AADG46_RS01260 (VNVC001_02070) | cysP | 245068..246069 (+) | 1002 | WP_088124614.1 | thiosulfate ABC transporter substrate-binding protein CysP | - |
| AADG46_RS01265 (VNVC001_02080) | cysT | 246146..246997 (+) | 852 | WP_000531809.1 | sulfate/thiosulfate ABC transporter permease CysT | - |
| AADG46_RS01270 (VNVC001_02090) | cysW | 247008..247871 (+) | 864 | WP_340701882.1 | sulfate ABC transporter permease subunit CysW | - |
| AADG46_RS01275 (VNVC001_02100) | - | 247868..248998 (+) | 1131 | WP_000027777.1 | sulfate/molybdate ABC transporter ATP-binding protein | - |
| AADG46_RS01280 (VNVC001_02110) | pncC | 249165..249671 (+) | 507 | WP_267776600.1 | nicotinamide-nucleotide amidase | - |
| AADG46_RS01285 (VNVC001_02120) | recA | 249805..250869 (+) | 1065 | WP_000344154.1 | recombinase RecA | Machinery gene |
| AADG46_RS01290 (VNVC001_02130) | recX | 251002..251460 (+) | 459 | WP_000006850.1 | recombination regulator RecX | - |
Sequence
Protein
Download Length: 335 a.a. Molecular weight: 38504.37 Da Isoelectric Point: 4.3648
>NTDB_id=106898 AADG46_RS01245 WP_000116735.1 239840..240847(+) (rpoS) [Vibrio cholerae strain VN152]
MSVSNTVTKVEEFDFEDEALEVLETDAELASDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLY
ARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALM
NQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILP
DSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVK
QGLNMEALFNVEYDN
MSVSNTVTKVEEFDFEDEALEVLETDAELASDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLY
ARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALM
NQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILP
DSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVK
QGLNMEALFNVEYDN
Nucleotide
Download Length: 1008 bp
>NTDB_id=106898 AADG46_RS01245 WP_000116735.1 239840..240847(+) (rpoS) [Vibrio cholerae strain VN152]
ATGAGTGTCAGCAATACCGTAACCAAAGTAGAAGAGTTCGATTTTGAAGATGAAGCACTGGAAGTGCTAGAAACTGATGC
CGAGCTCGCCAGTGATGAAGAATTAGTTGCTGTTGAAGGGGCAAGTGAAGACGTTCGTGAAGAGTTTGATGCTTCTGCGA
AAAGTCTTGATGCGACCCAGATGTATCTCAGCGAAATTGGTTTTTCACCGCTCCTTACTGCCGAAGAAGAAGTGCTTTAT
GCTCGTCGTGCCTTACGTGGTGATGAAGCCGCACGTAAACGCATGATTGAAAGTAACTTGCGTCTGGTGGTAAAAATTTC
ACGCCGTTACAGCAACCGAGGATTAGCACTGCTCGATCTGATTGAAGAAGGTAATCTTGGTCTGATCCGTGCGGTTGAGA
AATTCGATCCAGAACGCGGTTTCCGCTTCTCTACCTACGCAACATGGTGGATCCGTCAAACCATTGAACGTGCGCTGATG
AACCAAACACGCACCATTCGTCTACCGATTCATGTCGTCAAAGAGCTGAACATTTATTTGCGTACTGCTCGCGAATTATC
ACAGCGCCTTGACCACGAACCTACACCAGAAGAAATTGCTCTTGAGTTAGACCGACCTGTCGATGATGTCACTAAGATGC
TGCGTCTTAACGAACGGATCAGCTCAGTGGATACACCAATTGGTGGTGATGGAGATAAGGCACTGCTGGATATTTTGCCA
GACTCTCACAATGCCGATCCTGAGTTTTCAACTCAAGATGATGACATTCGTGAATCGCTGCTCAACTGGTTGGATGAACT
TAATCCAAAGCAAAAAGAAGTGCTTGCGCGTCGCTTTGGGCTTCTTGGCTATGAACCATCGACCTTGGAAGAAGTGGGTC
GTGAGATCAATCTCACTCGTGAGCGTGTTCGCCAAATCCAAGTGGAAGGTCTACGTCGTCTGCGTGAGATTTTGGTGAAA
CAAGGTTTGAATATGGAAGCTCTGTTTAACGTCGAATACGACAACTAA
ATGAGTGTCAGCAATACCGTAACCAAAGTAGAAGAGTTCGATTTTGAAGATGAAGCACTGGAAGTGCTAGAAACTGATGC
CGAGCTCGCCAGTGATGAAGAATTAGTTGCTGTTGAAGGGGCAAGTGAAGACGTTCGTGAAGAGTTTGATGCTTCTGCGA
AAAGTCTTGATGCGACCCAGATGTATCTCAGCGAAATTGGTTTTTCACCGCTCCTTACTGCCGAAGAAGAAGTGCTTTAT
GCTCGTCGTGCCTTACGTGGTGATGAAGCCGCACGTAAACGCATGATTGAAAGTAACTTGCGTCTGGTGGTAAAAATTTC
ACGCCGTTACAGCAACCGAGGATTAGCACTGCTCGATCTGATTGAAGAAGGTAATCTTGGTCTGATCCGTGCGGTTGAGA
AATTCGATCCAGAACGCGGTTTCCGCTTCTCTACCTACGCAACATGGTGGATCCGTCAAACCATTGAACGTGCGCTGATG
AACCAAACACGCACCATTCGTCTACCGATTCATGTCGTCAAAGAGCTGAACATTTATTTGCGTACTGCTCGCGAATTATC
ACAGCGCCTTGACCACGAACCTACACCAGAAGAAATTGCTCTTGAGTTAGACCGACCTGTCGATGATGTCACTAAGATGC
TGCGTCTTAACGAACGGATCAGCTCAGTGGATACACCAATTGGTGGTGATGGAGATAAGGCACTGCTGGATATTTTGCCA
GACTCTCACAATGCCGATCCTGAGTTTTCAACTCAAGATGATGACATTCGTGAATCGCTGCTCAACTGGTTGGATGAACT
TAATCCAAAGCAAAAAGAAGTGCTTGCGCGTCGCTTTGGGCTTCTTGGCTATGAACCATCGACCTTGGAAGAAGTGGGTC
GTGAGATCAATCTCACTCGTGAGCGTGTTCGCCAAATCCAAGTGGAAGGTCTACGTCGTCTGCGTGAGATTTTGGTGAAA
CAAGGTTTGAATATGGAAGCTCTGTTTAACGTCGAATACGACAACTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| rpoS | Vibrio cholerae O1 biovar El Tor strain E7946 |
99.701 |
100 |
0.997 |