Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACIA69_RS04820 Genome accession   NZ_CP172817
Coordinates   992488..993117 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain HS-01     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 987488..998117
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIA69_RS04800 ycbZ 987889..989649 (-) 1761 WP_000156518.1 Lon protease family protein -
  ACIA69_RS04805 matP 989835..990287 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ACIA69_RS04810 ompA 990363..991403 (-) 1041 WP_000750416.1 porin OmpA -
  ACIA69_RS04815 sulA 991760..992269 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ACIA69_RS04820 sxy/tfoX 992488..993117 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ACIA69_RS04825 yccS 993080..995242 (-) 2163 WP_000875061.1 YccS family putative transporter -
  ACIA69_RS04830 yccF 995252..995698 (-) 447 WP_001261235.1 YccF domain-containing protein -
  ACIA69_RS04835 helD 995821..997875 (+) 2055 WP_000420536.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=1068959 ACIA69_RS04820 WP_000839153.1 992488..993117(+) (sxy/tfoX) [Escherichia coli strain HS-01]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1068959 ACIA69_RS04820 WP_000839153.1 992488..993117(+) (sxy/tfoX) [Escherichia coli strain HS-01]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment