Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACIA67_RS04800 Genome accession   NZ_CP172816
Coordinates   998786..999415 (+) Length   209 a.a.
NCBI ID   WP_094770853.1    Uniprot ID   -
Organism   Escherichia coli strain BS-01     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 993786..1004415
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIA67_RS04780 ycbZ 994187..995947 (-) 1761 WP_000156518.1 Lon protease family protein -
  ACIA67_RS04785 matP 996133..996585 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  ACIA67_RS04790 ompA 996661..997701 (-) 1041 WP_000750416.1 porin OmpA -
  ACIA67_RS04795 sulA 998058..998567 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  ACIA67_RS04800 sxy/tfoX 998786..999415 (+) 630 WP_094770853.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  ACIA67_RS04805 yccS 999378..1001540 (-) 2163 WP_000875061.1 YccS family putative transporter -
  ACIA67_RS04810 yccF 1001550..1001996 (-) 447 WP_001261235.1 YccF domain-containing protein -
  ACIA67_RS04815 helD 1002119..1004173 (+) 2055 WP_001338439.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24205.05 Da        Isoelectric Point: 8.9882

>NTDB_id=1068937 ACIA67_RS04800 WP_094770853.1 998786..999415(+) (sxy/tfoX) [Escherichia coli strain BS-01]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIDIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=1068937 ACIA67_RS04800 WP_094770853.1 998786..999415(+) (sxy/tfoX) [Escherichia coli strain BS-01]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGACATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment