Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACHQIT_RS17420 Genome accession   NZ_CP172769
Coordinates   3549019..3549615 (-) Length   198 a.a.
NCBI ID   WP_012542296.1    Uniprot ID   A0A1F2LQD1
Organism   Klebsiella variicola strain BHC2     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3544019..3554615
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHQIT_RS17405 (ACHQIT_17415) helD 3544227..3546281 (-) 2055 WP_016160584.1 DNA helicase IV -
  ACHQIT_RS17410 (ACHQIT_17420) - 3546406..3546852 (+) 447 WP_008805896.1 YccF domain-containing protein -
  ACHQIT_RS17415 (ACHQIT_17425) yccS 3546870..3549005 (+) 2136 WP_008805895.1 YccS family putative transporter -
  ACHQIT_RS17420 (ACHQIT_17430) sxy/tfoX 3549019..3549615 (-) 597 WP_012542296.1 TfoX/Sxy family DNA transformation protein Regulator
  ACHQIT_RS17425 (ACHQIT_17435) sulA 3549966..3550475 (+) 510 WP_008805893.1 SOS-induced cell division inhibitor SulA -
  ACHQIT_RS17430 (ACHQIT_17440) ompA 3550828..3551880 (+) 1053 WP_008805892.1 porin OmpA -
  ACHQIT_RS17435 (ACHQIT_17445) matP 3551991..3552440 (-) 450 WP_049158034.1 macrodomain Ter protein MatP -
  ACHQIT_RS17440 (ACHQIT_17450) - 3552626..3554383 (+) 1758 WP_411178577.1 AAA family ATPase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22631.12 Da        Isoelectric Point: 10.0610

>NTDB_id=1068775 ACHQIT_RS17420 WP_012542296.1 3549019..3549615(-) (sxy/tfoX) [Klebsiella variicola strain BHC2]
MRKLVCPRFPQFQACVSPLGQLHSRPLFGGYSLAIDDTVFAMVAEGDIYLRACEQSAAYRVEHRNPLLTLRRHGRIVPMK
YYQIDDALWRDETQLFRLSLLSWQSAQREKNHRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQQAWQRLRENN
ASLSLNVLLALEGAIVGVHAAALPTLRRQELLEWAGAR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1068775 ACHQIT_RS17420 WP_012542296.1 3549019..3549615(-) (sxy/tfoX) [Klebsiella variicola strain BHC2]
ATGAGAAAACTAGTATGTCCGCGGTTCCCGCAATTTCAGGCCTGCGTCTCGCCGCTGGGTCAGTTACATTCTCGTCCGCT
TTTTGGCGGCTATAGCCTGGCCATTGATGATACGGTGTTTGCGATGGTGGCAGAGGGCGATATTTACCTGAGGGCCTGCG
AGCAGAGCGCCGCGTATCGGGTTGAACATCGCAATCCTTTATTAACGCTGCGCCGACATGGGCGCATCGTGCCGATGAAG
TATTATCAAATTGACGACGCATTGTGGCGCGATGAGACTCAGCTTTTTCGGCTGTCGCTGTTGTCGTGGCAGAGTGCGCA
GCGTGAAAAGAACCACCGACGGGCGTCGGGCCGTCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TCCACGCGGGCATACCGGATGTCAGGACGCTTCGGGAGGTAGGCGCTCAGCAGGCCTGGCAACGGCTACGAGAAAACAAC
GCCTCTCTGTCGCTCAACGTCTTGCTGGCGCTGGAGGGGGCGATTGTCGGCGTTCACGCCGCCGCGCTCCCGACGCTGCG
GCGTCAGGAGCTGCTCGAATGGGCTGGAGCCCGCTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(16-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1F2LQD1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

50.761

99.495

0.505

Multiple sequence alignment