Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACHQIZ_RS16170 Genome accession   NZ_CP172750
Coordinates   3257610..3258206 (-) Length   198 a.a.
NCBI ID   WP_264865147.1    Uniprot ID   -
Organism   Klebsiella pneumoniae strain FNC1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3252610..3263206
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHQIZ_RS16155 (ACHQIZ_16160) helD 3252818..3254872 (-) 2055 WP_014907883.1 DNA helicase IV -
  ACHQIZ_RS16160 (ACHQIZ_16165) - 3254997..3255443 (+) 447 WP_002898425.1 YccF domain-containing protein -
  ACHQIZ_RS16165 (ACHQIZ_16170) yccS 3255461..3257596 (+) 2136 WP_002898422.1 YccS family putative transporter -
  ACHQIZ_RS16170 (ACHQIZ_16175) sxy/tfoX 3257610..3258206 (-) 597 WP_264865147.1 TfoX/Sxy family DNA transformation protein Regulator
  ACHQIZ_RS16175 (ACHQIZ_16180) sulA 3258555..3259064 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  ACHQIZ_RS16180 (ACHQIZ_16185) ompA 3259417..3260487 (+) 1071 WP_002898408.1 porin OmpA -
  ACHQIZ_RS16185 (ACHQIZ_16190) matP 3260619..3261071 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  ACHQIZ_RS16190 (ACHQIZ_16195) - 3261257..3263014 (+) 1758 WP_004147851.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22534.15 Da        Isoelectric Point: 10.0350

>NTDB_id=1068637 ACHQIZ_RS16170 WP_264865147.1 3257610..3258206(-) (sxy/tfoX) [Klebsiella pneumoniae strain FNC1]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNCRRASGRLKDLPNISFHMELQLIHAGMPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1068637 ACHQIZ_RS16170 WP_264865147.1 3257610..3258206(-) (sxy/tfoX) [Klebsiella pneumoniae strain FNC1]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGAAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTGCCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATGCCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.282

98.485

0.505

Multiple sequence alignment