Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   ACAM51_RS11660 Genome accession   NZ_AP028672
Coordinates   2539617..2541206 (-) Length   529 a.a.
NCBI ID   WP_369643612.1    Uniprot ID   -
Organism   Acidovorax sp. A79     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2534617..2546206
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACAM51_RS11640 (GmRootA79_23040) - 2535476..2537209 (+) 1734 WP_369643608.1 ABC transporter ATP-binding protein/permease -
  ACAM51_RS11645 (GmRootA79_23050) - 2537261..2537752 (-) 492 WP_369643609.1 putative toxin-antitoxin system toxin component, PIN family -
  ACAM51_RS11650 (GmRootA79_23060) - 2537742..2539046 (-) 1305 WP_369643610.1 class I SAM-dependent RNA methyltransferase -
  ACAM51_RS11655 (GmRootA79_23070) - 2539043..2539525 (-) 483 WP_369643611.1 acyl-CoA thioesterase -
  ACAM51_RS11660 (GmRootA79_23080) rpoN/rpoN1 2539617..2541206 (-) 1590 WP_369643612.1 RNA polymerase factor sigma-54 Machinery gene
  ACAM51_RS11665 (GmRootA79_23090) lptB 2541295..2542080 (-) 786 WP_218296756.1 LPS export ABC transporter ATP-binding protein -
  ACAM51_RS11670 (GmRootA79_23100) lptA 2542077..2542733 (-) 657 WP_218296755.1 lipopolysaccharide transport periplasmic protein LptA -
  ACAM51_RS11675 (GmRootA79_23110) - 2542944..2543600 (-) 657 WP_218296754.1 thiol:disulfide interchange protein DsbA/DsbL -
  ACAM51_RS11680 (GmRootA79_23120) - 2543680..2544324 (-) 645 WP_369643613.1 SPOR domain-containing protein -
  ACAM51_RS11685 (GmRootA79_23130) argS 2544334..2546043 (-) 1710 WP_369643614.1 arginine--tRNA ligase -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58316.44 Da        Isoelectric Point: 4.6842

>NTDB_id=106858 ACAM51_RS11660 WP_369643612.1 2539617..2541206(-) (rpoN/rpoN1) [Acidovorax sp. A79]
MKPGLSLRVSQHLALTPQLQQSIRLLQLSTLELSQEVEQMLDENPFLERNADEAPREEFGLEAADTPAQADDYSADDAIF
SGATSASSTSAEAQNDAETPSAGTDEPDWSGDGTVEMAPNDAEWGGDAPARNRNDAEGDEADATELARTHESLTAFLHRQ
ALALRLSEIDRAALRFLIESLNDDGYLEDPLEELAISLAGPDDLEQIEELVHRFTVAQRLLQSLEPVGVGARGLAECLTL
QLKALAADEDSDIDPDTVQTALRVCQQPLEMLARRDVRRLTQACGDSEERTRAAMALIARLEPRPGRRFADVERNIIIPD
VIVRKAGRANGRDGQHNFIVQLNPDVMPRLRVHDIYAGALRGHKGGEGHQGMQQRLQEARWFIKNIQQRFDTILRVSRAI
VERQKNFFTHGELAMRPLVLRDIADELGLHESTISRVTTAKYMATPIGTYELKYFFGSGLGTETGGNASSTAVRALIKQF
VAAESPTKPLSDSQIAEMLKEQGIECARRTVAKYREALKIAPANLRKAL

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=106858 ACAM51_RS11660 WP_369643612.1 2539617..2541206(-) (rpoN/rpoN1) [Acidovorax sp. A79]
ATGAAACCTGGACTCTCGCTGCGCGTCTCGCAGCATCTTGCATTGACCCCCCAGCTTCAGCAGTCCATCCGGCTGCTGCA
GTTGTCCACGCTTGAACTCTCGCAGGAAGTCGAGCAGATGCTCGACGAAAACCCGTTCCTCGAACGCAACGCCGACGAGG
CGCCGCGCGAGGAGTTTGGCCTGGAAGCCGCCGATACGCCGGCCCAGGCCGACGACTACAGCGCGGATGATGCTATTTTT
TCAGGAGCTACCAGCGCAAGCAGTACCAGCGCTGAGGCTCAAAATGATGCTGAAACACCGAGCGCGGGCACCGACGAGCC
CGACTGGAGCGGCGACGGCACGGTGGAGATGGCGCCCAACGACGCCGAGTGGGGCGGCGACGCCCCCGCCCGCAACCGCA
ACGACGCCGAAGGCGACGAGGCCGACGCCACCGAGCTGGCCCGCACGCACGAATCGCTGACCGCCTTTTTGCACCGACAG
GCGCTGGCGCTGCGCCTGTCCGAGATCGACCGCGCCGCGCTGCGCTTCCTGATCGAATCGCTCAACGACGACGGCTACCT
GGAGGATCCGCTCGAAGAGCTGGCCATCAGCCTGGCCGGGCCCGACGACCTGGAGCAGATCGAGGAGCTGGTGCACCGCT
TCACCGTGGCACAGCGGCTGCTCCAGAGCCTGGAGCCCGTGGGCGTGGGCGCGCGCGGCCTGGCCGAGTGCCTGACGCTG
CAGCTCAAGGCGCTGGCCGCCGACGAGGACAGCGACATCGACCCCGACACCGTGCAGACCGCGCTGCGCGTGTGCCAGCA
GCCGCTGGAGATGCTGGCGCGGCGCGACGTGCGCCGCCTCACGCAGGCCTGCGGCGACAGCGAGGAGCGCACCCGCGCCG
CCATGGCGCTGATCGCCCGGCTGGAGCCGCGCCCGGGGCGCCGCTTCGCCGACGTGGAGCGCAACATCATCATCCCCGAC
GTGATCGTGCGCAAGGCCGGGCGCGCCAATGGCCGCGACGGGCAGCACAACTTCATCGTGCAGCTCAACCCCGACGTGAT
GCCGCGCCTGCGCGTGCACGACATCTATGCCGGCGCCCTGCGCGGCCACAAGGGCGGCGAGGGCCACCAGGGCATGCAGC
AGCGCCTGCAGGAGGCGCGCTGGTTCATCAAGAACATCCAGCAGCGCTTCGACACCATCCTGCGCGTCTCGCGCGCCATC
GTGGAGCGGCAGAAGAACTTCTTCACCCACGGCGAACTCGCGATGCGCCCGCTGGTGCTGCGCGACATCGCCGACGAGCT
GGGCCTGCACGAGTCCACCATCAGCCGCGTGACCACGGCCAAGTACATGGCCACGCCCATCGGCACCTACGAGCTCAAGT
ACTTCTTCGGCTCGGGCCTGGGCACCGAGACCGGCGGCAATGCGTCGAGCACCGCCGTGCGCGCCCTCATCAAGCAATTC
GTGGCCGCCGAGAGCCCGACCAAGCCGCTGTCCGACAGCCAGATCGCCGAGATGCTCAAGGAGCAGGGCATCGAGTGCGC
GCGCCGCACCGTCGCCAAGTACCGCGAGGCGCTCAAGATCGCGCCGGCGAATCTGCGCAAGGCGCTGTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(372-527)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(144-356)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

52.612

100

0.533

Multiple sequence alignment