Detailed information NTG1068351

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: ACGLYD_RS05960
• Genome accession: NZ_CP172607
• Coordinates: 1228053..1230503 (+)
• Length: 816 a.a.
• NCBI ID: WP_338652726.1
• Uniprot ID: -
• Organism: Sporosarcina sp. SG10008
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1223053..1235503

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACGLYD_RS05935 (ACGLYD_05935)	-	1223221..1224507 (-)	1287	WP_067208245.1	replication-associated recombination protein A	-
ACGLYD_RS05940 (ACGLYD_05940)	cymR	1224639..1225058 (+)	420	WP_067208248.1	cysteine metabolism transcriptional regulator CymR	-
ACGLYD_RS05945 (ACGLYD_05945)	-	1225071..1226213 (+)	1143	WP_340741934.1	cysteine desulfurase family protein	-
ACGLYD_RS05950 (ACGLYD_05950)	mnmA	1226237..1227358 (+)	1122	WP_338652729.1	tRNA 2-thiouridine(34) synthase MnmA	-
ACGLYD_RS05955 (ACGLYD_05955)	-	1227372..1228037 (+)	666	WP_067208256.1	lipopolysaccharide assembly protein LapB	-
ACGLYD_RS05960 (ACGLYD_05960)	recD2	1228053..1230503 (+)	2451	WP_338652726.1	ATP-dependent RecD-like DNA helicase	Machinery gene
ACGLYD_RS05965 (ACGLYD_05965)	alaS	1231052..1233685 (+)	2634	WP_399631887.1	alanine--tRNA ligase	-
ACGLYD_RS05970 (ACGLYD_05970)	-	1233768..1234040 (+)	273	WP_067208264.1	IreB family regulatory phosphoprotein	-
ACGLYD_RS05975 (ACGLYD_05975)	ruvX	1234037..1234456 (+)	420	WP_067208266.1	Holliday junction resolvase RuvX	-
ACGLYD_RS05980 (ACGLYD_05980)	-	1234467..1234766 (+)	300	WP_067208268.1	DUF1292 domain-containing protein	-

Sequence

Protein

• Length: 816 a.a.
• Molecular weight: 90843.36 Da
• Isoelectric Point: 4.9811

>NTDB_id=1068351 ACGLYD_RS05960 WP_338652726.1 1228053..1230503(+) (recD2) [Sporosarcina sp. SG10008]
MEGNNMAGNTDEVFLIGRPVVTIFHNPDSLFTIAKLKVRETNSGNEDKEIIVKGSFPQLNPEDDYKFTGKLVNHPTYGAQ
FDVHTFAKEMPATETGLVHYLSGDLFPGIGMKTAQTIVKKLGKDAIKKILDDPSVLGTIPKLADDKKETLISVLEQNMGL
ERTIIQLNEWGFGPQIAMRIYQKYREESVSLLSENPYRLIEEIEGVGFQRADELGKNLGITGNHPSRIKAAILHSMNQAV
QSAGHVYVEAEAILPDVKRLLEMSQRIDIPFADISQAIIVLVEEGKLSAEERRLYIPSLYFSEIGIAAKLERIMENDTAD
QFPVSEIRKAVGEVEERLGVNYAETQVAAIETALHSPLMILTGGPGTGKTTVIRGFVEVYAELHGLSLDPKEYAKKKEPF
PIVLAAPTGRAAKRMSESTGLPAMTIHRLLGFNGQEKDEETEREVEGRLIIIDEMSMVDTWLAHQLLKALANDVQLLFVG
DQDQLPPVGPGQVLRDMLDSGKVPIIELTEVFRQSEGSSIIEMAHMIKRSEWTDDITKKTSDRSFIKAGSDRILEVVEQV
VKNAITKGHRIKDIQVLAPMYRGPAGIDGLNKMIQEMVNPPGPKRKEVVFGEAIYRIGDKVLQLVNQPESNVFNGDMGEV
IAIIKAKETIDKKELLVVSYDGIEVTYERNDLNQLTLAYCCSIHKSQGSEFPIVIMPIVRGHRKMLRRNLLYTGITRAKN
FLILCGEPEEFRAGIARTDELERQTTLKERLNGDVVELVAMESPDPERAKVSNEAHVSSEDSQPVIFSLTMETFLSIDPL
IGMKGVTPYEFLEVSD

Nucleotide

• Length: 2451 bp

>NTDB_id=1068351 ACGLYD_RS05960 WP_338652726.1 1228053..1230503(+) (recD2) [Sporosarcina sp. SG10008]
ATGGAAGGGAACAACATGGCGGGAAATACGGATGAAGTTTTTTTGATTGGACGACCAGTCGTGACAATCTTCCATAACCC
CGACAGCCTTTTTACAATCGCGAAATTAAAAGTTCGTGAAACGAATAGTGGGAATGAAGATAAAGAAATCATCGTTAAAG
GCAGTTTTCCACAACTGAATCCAGAAGATGACTATAAATTTACAGGTAAACTAGTTAATCATCCGACATACGGTGCGCAG
TTTGATGTGCATACCTTTGCGAAAGAGATGCCGGCAACAGAAACGGGACTGGTCCATTATCTGTCAGGTGATTTGTTTCC
GGGCATCGGGATGAAGACAGCTCAAACAATTGTTAAAAAGCTAGGCAAGGATGCTATTAAAAAAATACTTGACGATCCGT
CTGTTCTTGGTACTATTCCGAAACTAGCGGATGATAAAAAAGAGACATTGATTTCCGTTTTGGAGCAGAATATGGGGCTT
GAGCGGACAATTATCCAATTGAATGAATGGGGATTCGGACCGCAAATCGCTATGCGCATTTATCAGAAGTATCGTGAAGA
ATCGGTTTCATTGCTGTCGGAAAATCCATATCGACTTATTGAAGAAATTGAAGGGGTAGGTTTTCAGCGTGCGGACGAAC
TCGGCAAAAACCTAGGCATTACAGGAAACCACCCTTCAAGAATCAAGGCAGCCATTCTTCATTCAATGAACCAAGCAGTG
CAATCAGCGGGGCATGTATACGTTGAAGCGGAAGCCATTTTGCCAGATGTCAAACGCCTGCTCGAAATGAGTCAGCGCAT
TGATATTCCATTTGCAGATATTTCCCAGGCAATTATTGTGCTTGTCGAGGAAGGCAAGCTATCTGCTGAAGAACGTAGAT
TATACATACCTTCCCTCTACTTTTCAGAAATCGGTATCGCTGCGAAGCTTGAGCGCATTATGGAAAATGACACAGCGGAT
CAATTTCCTGTGTCTGAAATAAGAAAAGCGGTCGGGGAAGTTGAAGAGCGGCTAGGTGTTAATTATGCAGAAACACAAGT
TGCAGCGATTGAAACAGCCCTTCATTCGCCATTAATGATATTAACGGGCGGTCCTGGAACCGGGAAAACGACTGTTATTC
GTGGTTTTGTCGAAGTGTATGCAGAACTTCACGGATTGTCGCTCGACCCGAAAGAGTATGCCAAAAAGAAAGAACCATTT
CCGATTGTATTAGCGGCGCCTACTGGGCGTGCAGCTAAGCGTATGTCGGAATCGACTGGATTACCTGCGATGACAATTCA
CCGTTTGCTTGGATTCAACGGGCAGGAAAAGGATGAAGAGACTGAGCGGGAAGTTGAAGGGCGTCTCATTATCATTGATG
AAATGTCGATGGTCGATACATGGCTTGCCCATCAGTTATTAAAGGCACTTGCCAATGATGTACAACTGTTATTCGTTGGT
GACCAAGACCAGCTGCCGCCTGTAGGACCCGGTCAAGTACTTCGGGATATGCTAGACTCTGGGAAAGTTCCTATCATTGA
GTTGACTGAAGTATTTCGGCAAAGTGAAGGTTCGTCGATTATTGAAATGGCTCATATGATTAAACGGTCAGAATGGACAG
ATGACATAACGAAGAAAACATCGGATCGTTCATTTATCAAAGCGGGTAGCGATCGAATTCTCGAAGTCGTCGAACAAGTC
GTGAAAAATGCCATTACCAAAGGTCACCGCATTAAAGACATCCAAGTTCTTGCGCCGATGTATAGAGGACCGGCGGGTAT
TGATGGTTTAAACAAAATGATTCAGGAAATGGTCAATCCACCAGGACCAAAACGCAAAGAAGTGGTTTTTGGCGAAGCGA
TTTACCGAATTGGTGATAAAGTGCTTCAGCTTGTCAACCAACCCGAGAGTAATGTTTTTAACGGAGATATGGGTGAAGTC
ATTGCGATTATCAAAGCGAAAGAAACAATTGATAAAAAAGAACTACTAGTTGTTTCGTACGATGGAATTGAAGTTACCTA
TGAACGCAATGATCTTAACCAGCTGACACTTGCTTATTGCTGTTCAATCCATAAATCCCAGGGCAGCGAATTCCCAATCG
TCATTATGCCAATCGTCCGCGGTCATCGTAAAATGTTGCGTCGTAATTTACTGTATACCGGCATCACTCGTGCAAAAAAC
TTCCTTATCCTCTGTGGTGAGCCTGAAGAGTTCAGGGCAGGTATAGCACGAACTGACGAATTGGAGAGGCAGACGACATT
AAAAGAACGGTTAAACGGCGATGTCGTTGAACTGGTAGCTATGGAGTCTCCTGATCCTGAGCGTGCAAAGGTTTCTAATG
AGGCGCATGTGAGTTCAGAGGATTCCCAACCTGTCATTTTCTCACTTACGATGGAAACTTTCCTATCAATCGATCCGCTG
ATTGGCATGAAAGGGGTAACGCCTTATGAATTTCTTGAAGTTTCAGATTGA

Domains

Predicted by InterproScan.

• Helix-hairpin-helix containing domain (HHH_RecD2) (157-247)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (678-725)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (590-649)

• AAA domain (AAA_30) (342-550)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	52.54	98.897	0.52