Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   ACFVP7_RS15525 Genome accession   NZ_CP172606
Coordinates   2918789..2919535 (-) Length   248 a.a.
NCBI ID   WP_101172351.1    Uniprot ID   -
Organism   Bacillus sp. SG20033     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2913789..2924535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFVP7_RS15500 (ACFVP7_15500) mreC 2914195..2915067 (-) 873 WP_003222609.1 rod shape-determining protein MreC -
  ACFVP7_RS15505 (ACFVP7_15505) mreB 2915098..2916111 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  ACFVP7_RS15510 (ACFVP7_15510) radC 2916203..2916898 (-) 696 WP_041351757.1 DNA repair protein RadC -
  ACFVP7_RS15515 (ACFVP7_15515) - 2916935..2917504 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  ACFVP7_RS15520 (ACFVP7_15520) spoIIB 2917657..2918655 (-) 999 WP_396582443.1 stage II sporulation protein SpoIIB -
  ACFVP7_RS15525 (ACFVP7_15525) comC 2918789..2919535 (-) 747 WP_101172351.1 A24 family peptidase Machinery gene
  ACFVP7_RS15530 (ACFVP7_15530) - 2919675..2920967 (-) 1293 WP_338730649.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  ACFVP7_RS15535 (ACFVP7_15535) valS 2921027..2923669 (-) 2643 WP_017697542.1 valine--tRNA ligase -
  ACFVP7_RS15540 (ACFVP7_15540) - 2924117..2924308 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26453.01 Da        Isoelectric Point: 9.7944

>NTDB_id=1068320 ACFVP7_RS15525 WP_101172351.1 2918789..2919535(-) (comC) [Bacillus sp. SG20033]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGATAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=1068320 ACFVP7_RS15525 WP_101172351.1 2918789..2919535(-) (comC) [Bacillus sp. SG20033]
ATGCTATCCATTCTTTTTATCTTCGGACTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGCGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCTGCCGCAGGAATACGCTTTGGCACATCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGAATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCACTTGATTCCTGGTATGCAGGCCTGCTAGGTGCGGCAGCCGGATTTCTATTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCAGTTTTGATAGGTGCATTATATGGAGCGACAGCTGTTCTAACTGGTAGGCTCGCTA
AAAGGCAGCCGCTTCCCTTCGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

99.194

100

0.992

Multiple sequence alignment