Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   ACFVP7_RS12680 Genome accession   NZ_CP172606
Coordinates   2419593..2420213 (+) Length   206 a.a.
NCBI ID   WP_024571847.1    Uniprot ID   -
Organism   Bacillus sp. SG20033     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2414593..2425213
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFVP7_RS12640 (ACFVP7_12640) - 2415724..2416230 (-) 507 WP_015483368.1 PTS glucose transporter subunit IIA -
  ACFVP7_RS12645 (ACFVP7_12645) - 2416368..2416787 (+) 420 WP_015714150.1 Hsp20/alpha crystallin family protein -
  ACFVP7_RS12650 (ACFVP7_12650) - 2416808..2417185 (-) 378 WP_014477159.1 YppG family protein -
  ACFVP7_RS12655 (ACFVP7_12655) - 2417373..2417561 (+) 189 WP_003230690.1 YppF family protein -
  ACFVP7_RS12660 (ACFVP7_12660) - 2417600..2417971 (-) 372 WP_338730519.1 YppE family protein -
  ACFVP7_RS12665 (ACFVP7_12665) - 2418017..2418262 (-) 246 WP_338730520.1 YppD family protein -
  ACFVP7_RS12670 (ACFVP7_12670) sspM 2418461..2418565 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  ACFVP7_RS12675 (ACFVP7_12675) - 2418590..2419552 (-) 963 WP_029878384.1 DUF2515 domain-containing protein -
  ACFVP7_RS12680 (ACFVP7_12680) recU 2419593..2420213 (+) 621 WP_024571847.1 Holliday junction resolvase RecU Machinery gene
  ACFVP7_RS12685 (ACFVP7_12685) - 2420235..2422988 (+) 2754 WP_396582227.1 PBP1A family penicillin-binding protein -
  ACFVP7_RS12690 (ACFVP7_12690) - 2423064..2423558 (-) 495 WP_009967579.1 YpoC family protein -
  ACFVP7_RS12695 (ACFVP7_12695) nth 2423555..2424214 (-) 660 WP_009967580.1 endonuclease III -
  ACFVP7_RS12700 (ACFVP7_12700) dnaD 2424233..2424931 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23975.09 Da        Isoelectric Point: 9.6240

>NTDB_id=1068301 ACFVP7_RS12680 WP_024571847.1 2419593..2420213(+) (recU) [Bacillus sp. SG20033]
MIRYPNGKTFQPKHSVSSQNSQKRSPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=1068301 ACFVP7_RS12680 WP_024571847.1 2419593..2420213(+) (recU) [Bacillus sp. SG20033]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGTCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

99.515

100

0.995

Multiple sequence alignment