Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   ACFVP7_RS11830 Genome accession   NZ_CP172606
Coordinates   2281698..2282828 (+) Length   376 a.a.
NCBI ID   WP_338730481.1    Uniprot ID   -
Organism   Bacillus sp. SG20033     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2270863..2309026 2281698..2282828 within 0


Gene organization within MGE regions


Location: 2270863..2309026
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFVP7_RS11730 (ACFVP7_11730) - 2270863..2270994 (-) 132 WP_043857647.1 hypothetical protein -
  ACFVP7_RS11735 (ACFVP7_11735) - 2271005..2271234 (-) 230 Protein_2261 hypothetical protein -
  ACFVP7_RS11740 (ACFVP7_11740) - 2271238..2271489 (-) 252 WP_072176392.1 hypothetical protein -
  ACFVP7_RS11745 (ACFVP7_11745) - 2271554..2271733 (+) 180 WP_151262527.1 hypothetical protein -
  ACFVP7_RS11750 (ACFVP7_11750) - 2271845..2272075 (+) 231 WP_043857649.1 membrane protein -
  ACFVP7_RS11755 (ACFVP7_11755) - 2272085..2272477 (-) 393 WP_072176394.1 UPF0715 family protein -
  ACFVP7_RS11760 (ACFVP7_11760) - 2272522..2272743 (-) 222 WP_116315615.1 hypothetical protein -
  ACFVP7_RS11765 (ACFVP7_11765) - 2272781..2273134 (-) 354 WP_338734158.1 hypothetical protein -
  ACFVP7_RS11770 (ACFVP7_11770) - 2273243..2273884 (-) 642 WP_338730477.1 DUF3885 domain-containing protein -
  ACFVP7_RS11775 (ACFVP7_11775) - 2274058..2274284 (-) 227 Protein_2269 helix-turn-helix domain-containing protein -
  ACFVP7_RS11780 (ACFVP7_11780) - 2274376..2274813 (-) 438 WP_046160477.1 hypothetical protein -
  ACFVP7_RS11785 (ACFVP7_11785) - 2274904..2275287 (-) 384 WP_046160541.1 UPF0715 family protein -
  ACFVP7_RS11790 (ACFVP7_11790) - 2275614..2276168 (-) 555 WP_338730479.1 hypothetical protein -
  ACFVP7_RS11795 (ACFVP7_11795) - 2276675..2277040 (+) 366 WP_071577897.1 hypothetical protein -
  ACFVP7_RS11800 (ACFVP7_11800) - 2277262..2277936 (+) 675 WP_338734159.1 SOS response-associated peptidase -
  ACFVP7_RS11805 (ACFVP7_11805) - 2278198..2279115 (-) 918 WP_230488201.1 hypothetical protein -
  ACFVP7_RS11810 (ACFVP7_11810) - 2279180..2279347 (-) 168 Protein_2276 hypothetical protein -
  ACFVP7_RS11815 (ACFVP7_11815) - 2279491..2279715 (+) 225 Protein_2277 hypothetical protein -
  ACFVP7_RS11820 (ACFVP7_11820) - 2280247..2280621 (+) 375 WP_338730480.1 YoqO family protein -
  ACFVP7_RS11825 (ACFVP7_11825) - 2281487..2281564 (+) 78 WP_227057947.1 phage holin -
  ACFVP7_RS11830 (ACFVP7_11830) rapC 2281698..2282828 (+) 1131 WP_338730481.1 Rap family tetratricopeptide repeat protein Regulator
  ACFVP7_RS11835 (ACFVP7_11835) - 2282818..2282961 (+) 144 WP_153801665.1 hypothetical protein -
  ACFVP7_RS11840 (ACFVP7_11840) - 2283115..2283315 (-) 201 WP_021481449.1 hypothetical protein -
  ACFVP7_RS11845 (ACFVP7_11845) - 2283538..2284203 (-) 666 WP_338730483.1 DNA polymerase thumb domain-containing protein -
  ACFVP7_RS11850 (ACFVP7_11850) - 2284182..2284766 (-) 585 WP_338730484.1 type VI secretion protein ImpB -
  ACFVP7_RS11855 (ACFVP7_11855) - 2284759..2285054 (-) 296 Protein_2285 YolD-like family protein -
  ACFVP7_RS11860 (ACFVP7_11860) - 2285215..2285507 (+) 293 Protein_2286 hypothetical protein -
  ACFVP7_RS11865 (ACFVP7_11865) - 2285547..2285906 (-) 360 WP_043857661.1 hypothetical protein -
  ACFVP7_RS11870 (ACFVP7_11870) - 2286166..2286249 (+) 84 WP_072592542.1 putative holin-like toxin -
  ACFVP7_RS11875 (ACFVP7_11875) - 2286538..2287071 (-) 534 WP_085187541.1 GNAT family N-acetyltransferase -
  ACFVP7_RS11880 (ACFVP7_11880) - 2287107..2287685 (-) 579 WP_257432906.1 SMI1/KNR4 family protein -
  ACFVP7_RS11885 (ACFVP7_11885) - 2287748..2288245 (-) 498 WP_144530259.1 SMI1/KNR4 family protein -
  ACFVP7_RS11890 (ACFVP7_11890) - 2288256..2289971 (-) 1716 Protein_2292 T7SS effector LXG polymorphic toxin -
  ACFVP7_RS11895 (ACFVP7_11895) - 2290111..2290629 (-) 519 WP_338730486.1 SMI1/KNR4 family protein -
  ACFVP7_RS11900 (ACFVP7_11900) - 2290757..2292193 (+) 1437 WP_124073037.1 flavin monoamine oxidase family protein -
  ACFVP7_RS11905 (ACFVP7_11905) csaA 2292443..2292775 (-) 333 WP_014480003.1 chaperone CsaA -
  ACFVP7_RS11910 (ACFVP7_11910) - 2292840..2293565 (-) 726 WP_072174094.1 helix-turn-helix domain-containing protein -
  ACFVP7_RS11915 (ACFVP7_11915) - 2293580..2294323 (-) 744 WP_021481454.1 N-acetyltransferase -
  ACFVP7_RS11920 (ACFVP7_11920) - 2294401..2294976 (-) 576 WP_396582170.1 TetR/AcrR family transcriptional regulator -
  ACFVP7_RS11925 (ACFVP7_11925) - 2294982..2295683 (-) 702 WP_087961118.1 MBL fold metallo-hydrolase -
  ACFVP7_RS11930 (ACFVP7_11930) - 2295759..2296241 (-) 483 WP_014480008.1 GyrI-like domain-containing protein -
  ACFVP7_RS11935 (ACFVP7_11935) - 2296295..2297236 (-) 942 WP_396582172.1 helix-turn-helix transcriptional regulator -
  ACFVP7_RS11940 (ACFVP7_11940) csk22 2297442..2297987 (+) 546 WP_095843767.1 mother cell-specific sporulation protein Csk22 -
  ACFVP7_RS11945 (ACFVP7_11945) czrA 2298014..2298337 (-) 324 WP_003231284.1 Zn(II)-responsive metalloregulatory transcriptional repressor CzrA -
  ACFVP7_RS11950 (ACFVP7_11950) - 2298531..2299208 (+) 678 WP_014480011.1 lysozyme family protein -
  ACFVP7_RS11955 (ACFVP7_11955) - 2299298..2299834 (-) 537 WP_003231280.1 DUF420 domain-containing protein -
  ACFVP7_RS11960 (ACFVP7_11960) - 2299971..2300753 (-) 783 WP_038829953.1 VLRF1 family aeRF1-type release factor -
  ACFVP7_RS11965 (ACFVP7_11965) - 2300924..2301421 (+) 498 WP_014477061.1 N-acetyltransferase -
  ACFVP7_RS11970 (ACFVP7_11970) - 2301485..2302462 (+) 978 WP_014477062.1 S66 peptidase family protein -
  ACFVP7_RS11975 (ACFVP7_11975) desE 2302624..2303682 (+) 1059 WP_004399588.1 fatty acid desaturase DesE -
  ACFVP7_RS11980 (ACFVP7_11980) desK 2303802..2304914 (+) 1113 WP_014480016.1 two-component sensor histidine kinase DesK -
  ACFVP7_RS11985 (ACFVP7_11985) desR 2304933..2305532 (+) 600 WP_004399356.1 two-component system response regulator DesR -
  ACFVP7_RS11990 (ACFVP7_11990) - 2306140..2307003 (-) 864 WP_021481459.1 LysM peptidoglycan-binding and 3D domain-containing protein -
  ACFVP7_RS11995 (ACFVP7_11995) recQ 2307251..2309026 (-) 1776 WP_163130792.1 DNA helicase RecQ -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44393.20 Da        Isoelectric Point: 6.0777

>NTDB_id=1068300 ACFVP7_RS11830 WP_338730481.1 2281698..2282828(+) (rapC) [Bacillus sp. SG20033]
MEQLIPSSTVGVKINEWYKYIRMFAVPDAEILKAEVEEEIKHMKEDQDLLLYYSLMCFRHQLMLDYLEPKSLNEERPKIS
DLLEKIESSQTKLKGVLEYYCNFFRGMYEFDKKDYIKAIRSYKIAEKKLALVTDEIERAEFYFKMAEVYYHMKQTHVSMH
YAEAALNIYKDQKTYTVRRIQCAFVVAGNFDDLESHEKAVPHLQRALKDSKAINKHKLIGASLYNLGNCYYKMKEYDKAA
EYIEQAVSLYENDKSDLLPHTLFTLTQIYFKMKDIEKAFILYKKGIKKAQAINDDVLVAEFNYLKALYIDSIDKRTVFRT
FSVLKDNVMYPDLEELALDTANYCKEIGQFENSTTFFDVMVDARIQIQRGECLYEI

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=1068300 ACFVP7_RS11830 WP_338730481.1 2281698..2282828(+) (rapC) [Bacillus sp. SG20033]
ATGGAGCAATTAATTCCGTCATCCACGGTTGGAGTTAAAATCAATGAGTGGTATAAATACATACGGATGTTCGCCGTTCC
AGATGCTGAGATATTAAAAGCAGAGGTTGAAGAAGAAATAAAACATATGAAGGAAGATCAAGACTTATTGTTGTATTATT
CTCTAATGTGTTTTCGTCATCAGCTAATGCTGGATTACCTTGAACCTAAGTCATTGAATGAAGAACGCCCTAAAATTTCA
GACTTATTAGAAAAGATCGAAAGCAGTCAAACAAAGCTTAAAGGTGTCCTGGAATATTACTGCAATTTCTTTAGAGGAAT
GTACGAATTTGATAAGAAGGATTATATAAAAGCAATAAGGTCATATAAAATTGCTGAGAAAAAGCTCGCTTTAGTAACAG
ACGAAATTGAACGAGCTGAGTTTTATTTCAAAATGGCTGAAGTTTATTATCACATGAAACAAACCCATGTATCAATGCAC
TATGCTGAAGCAGCACTTAACATTTATAAAGACCAAAAAACTTATACTGTTCGCCGAATACAATGTGCATTTGTTGTAGC
AGGCAACTTTGATGATCTGGAAAGTCATGAAAAAGCAGTTCCGCATCTTCAAAGAGCCCTAAAAGATTCTAAAGCTATAA
ACAAGCACAAACTAATTGGGGCATCATTATATAATTTGGGAAATTGTTATTATAAGATGAAAGAGTATGACAAAGCTGCT
GAATATATTGAACAAGCAGTTTCACTGTACGAAAACGATAAAAGTGATCTTCTCCCTCATACGTTATTTACACTGACACA
AATTTACTTCAAAATGAAGGATATTGAAAAAGCCTTTATTCTTTATAAAAAAGGAATCAAGAAAGCACAAGCCATTAACG
ATGATGTCTTAGTTGCTGAGTTTAATTACTTAAAGGCTTTATATATCGACTCTATAGATAAACGCACAGTTTTCCGAACT
TTTTCTGTACTTAAAGATAATGTAATGTATCCAGATTTAGAGGAATTAGCACTCGACACGGCTAATTATTGTAAGGAGAT
AGGGCAATTTGAAAACTCAACCACCTTTTTTGACGTCATGGTGGATGCCCGAATCCAAATACAAAGAGGAGAGTGTTTAT
ATGAAATTTAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_12)

(221-287)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

50.798

100

0.508
  rapF Bacillus subtilis subsp. subtilis str. 168

45.119

100

0.455

Multiple sequence alignment