Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   ACAM54_RS22060 Genome accession   NZ_AP028669
Coordinates   4647588..4647986 (-) Length   132 a.a.
NCBI ID   WP_015867390.1    Uniprot ID   A0A3P3EQ97
Organism   Variovorax sp. V93     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 4642588..4652986
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACAM54_RS22045 (GmRootV93_43730) - 4644317..4646626 (-) 2310 WP_145740088.1 methyl-accepting chemotaxis protein -
  ACAM54_RS22050 (GmRootV93_43740) - 4646669..4647202 (-) 534 WP_025569402.1 chemotaxis protein CheW -
  ACAM54_RS22055 (GmRootV93_43750) - 4647222..4647587 (-) 366 WP_015867389.1 PleD family two-component system response regulator -
  ACAM54_RS22060 (GmRootV93_43760) pilG 4647588..4647986 (-) 399 WP_015867390.1 PleD family two-component system response regulator Regulator
  ACAM54_RS22065 (GmRootV93_43770) - 4648068..4648238 (-) 171 WP_007838397.1 rubredoxin -
  ACAM54_RS22070 (GmRootV93_43780) - 4648350..4649315 (+) 966 WP_145740084.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  ACAM54_RS22075 (GmRootV93_43790) hemL 4649315..4650610 (+) 1296 WP_369648926.1 glutamate-1-semialdehyde 2,1-aminomutase -
  ACAM54_RS22080 (GmRootV93_43800) purH 4650657..4652264 (-) 1608 WP_025569406.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase -
  ACAM54_RS22085 (GmRootV93_43810) - 4652285..4652521 (-) 237 WP_007838304.1 Fis family transcriptional regulator -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14708.85 Da        Isoelectric Point: 7.3215

>NTDB_id=106829 ACAM54_RS22060 WP_015867390.1 4647588..4647986(-) (pilG) [Variovorax sp. V93]
MGPNGSGYKVLVIDDSNTIRRSAEIFLKQGGHEVLLAEDGFDALSKVNDHKPHLIFCDILMPRLDGYQTCAIIKRNAHFS
NVPVVMLSSKDGVFDKARGRMVGSQDYLTKPFTKDQLLQAVQQFGTLQQEVQ

Nucleotide


Download         Length: 399 bp        

>NTDB_id=106829 ACAM54_RS22060 WP_015867390.1 4647588..4647986(-) (pilG) [Variovorax sp. V93]
ATGGGGCCGAATGGATCAGGTTACAAGGTGCTCGTCATTGACGACAGCAATACGATCCGGCGCAGTGCCGAAATATTTCT
GAAGCAGGGCGGACACGAGGTTCTTCTCGCGGAAGACGGCTTCGACGCGCTCTCCAAGGTTAACGACCACAAGCCGCATC
TGATTTTCTGCGACATCCTGATGCCGCGGCTGGACGGCTACCAGACCTGCGCCATCATCAAGCGCAACGCTCATTTCTCC
AATGTTCCGGTCGTGATGCTCTCCTCGAAAGACGGCGTCTTCGACAAGGCTCGCGGCCGCATGGTCGGGTCGCAGGACTA
CCTGACCAAACCTTTCACCAAAGACCAGCTGCTGCAGGCCGTGCAGCAGTTTGGCACCCTTCAACAGGAAGTGCAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3P3EQ97

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

62.281

86.364

0.538

Multiple sequence alignment