Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   ACFVP7_RS05720 Genome accession   NZ_CP172606
Coordinates   1104539..1105117 (+) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus sp. SG20033     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1099539..1110117
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFVP7_RS05695 (ACFVP7_05695) - 1100050..1100565 (-) 516 WP_326255844.1 methyl-accepting chemotaxis protein -
  ACFVP7_RS05700 (ACFVP7_05700) - 1100806..1101432 (-) 627 Protein_1056 protoglobin domain-containing protein -
  ACFVP7_RS05705 (ACFVP7_05705) - 1101487..1103016 (-) 1530 WP_338733071.1 FAD-dependent oxidoreductase -
  ACFVP7_RS05710 (ACFVP7_05710) - 1103128..1103985 (+) 858 WP_003245662.1 SDR family oxidoreductase -
  ACFVP7_RS05715 (ACFVP7_05715) - 1104013..1104246 (-) 234 WP_262119605.1 IDEAL domain-containing protein -
  ACFVP7_RS05720 (ACFVP7_05720) comK 1104539..1105117 (+) 579 WP_003245329.1 competence transcription factor ComK Regulator
  ACFVP7_RS05725 (ACFVP7_05725) - 1105162..1106061 (-) 900 WP_003245421.1 SDR family oxidoreductase -
  ACFVP7_RS05730 (ACFVP7_05730) - 1106278..1106547 (+) 270 WP_338733076.1 excalibur calcium-binding domain-containing protein -
  ACFVP7_RS05735 (ACFVP7_05735) - 1106591..1108060 (-) 1470 WP_338733078.1 sodium:solute symporter -
  ACFVP7_RS05740 (ACFVP7_05740) - 1108057..1108257 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  ACFVP7_RS05745 (ACFVP7_05745) - 1108465..1108827 (-) 363 WP_087961168.1 hypothetical protein -
  ACFVP7_RS05750 (ACFVP7_05750) - 1108979..1109602 (+) 624 WP_010886465.1 TVP38/TMEM64 family protein -
  ACFVP7_RS05755 (ACFVP7_05755) lepB 1109604..1110110 (+) 507 WP_338733083.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=1068281 ACFVP7_RS05720 WP_003245329.1 1104539..1105117(+) (comK) [Bacillus sp. SG20033]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=1068281 ACFVP7_RS05720 WP_003245329.1 1104539..1105117(+) (comK) [Bacillus sp. SG20033]
ATGAGTCAGAAAACAGACGCACCTTTGGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCA
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCAAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATATCGAACAGCGTGGCTTAGAACCAAGTTCCAAGACAGAATCGACCAC
CGCGTTCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment