Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   ACFMPA_RS12795 Genome accession   NZ_CP172605
Coordinates   2499273..2500040 (-) Length   255 a.a.
NCBI ID   WP_015384118.1    Uniprot ID   -
Organism   Bacillus sp. SG20032     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2494273..2505040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFMPA_RS12775 (ACFMPA_12775) - 2494447..2495259 (-) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -
  ACFMPA_RS12780 (ACFMPA_12780) ccpN 2495285..2495923 (-) 639 WP_003237058.1 transcriptional regulator CcpN -
  ACFMPA_RS12785 (ACFMPA_12785) glyS 2496056..2498095 (-) 2040 WP_032722129.1 glycine--tRNA ligase subunit beta -
  ACFMPA_RS12790 (ACFMPA_12790) glyQ 2498088..2498975 (-) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  ACFMPA_RS12795 (ACFMPA_12795) recO 2499273..2500040 (-) 768 WP_015384118.1 DNA repair protein RecO Machinery gene
  ACFMPA_RS12800 (ACFMPA_12800) - 2500077..2500220 (-) 144 WP_003230053.1 YqzL family protein -
  ACFMPA_RS12805 (ACFMPA_12805) era 2500368..2501273 (-) 906 WP_003230051.1 GTPase Era -
  ACFMPA_RS12810 (ACFMPA_12810) - 2501254..2501664 (-) 411 WP_003230049.1 cytidine deaminase -
  ACFMPA_RS12815 (ACFMPA_12815) - 2501783..2502154 (-) 372 WP_015384119.1 diacylglycerol kinase family protein -
  ACFMPA_RS12820 (ACFMPA_12820) ybeY 2502135..2502608 (-) 474 WP_032722131.1 rRNA maturation RNase YbeY -
  ACFMPA_RS12825 (ACFMPA_12825) pgpH 2502609..2504744 (-) 2136 WP_010886570.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29332.01 Da        Isoelectric Point: 8.3080

>NTDB_id=1068233 ACFMPA_RS12795 WP_015384118.1 2499273..2500040(-) (recO) [Bacillus sp. SG20032]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYIAELVDRGTEEKKSNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=1068233 ACFMPA_RS12795 WP_015384118.1 2499273..2500040(-) (recO) [Bacillus sp. SG20032]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACATTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATATTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGTC
AAATCCTTATTTATTTGAATTCATATTAGAATCATTAAAACAGCTGAATGAAGGAACAGATCCGGATGTTATCACTTTCA
TTGTTCAAATGAAGATGCTAGGTGTCATGGGCCTGTATCCTGAGCTGAATCATTGTGTACATTGTAAAAGCCAGGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATTAA
ACCGCAAACGGCAAGGCTGTTAAGACTCTTTTACTATTTTGATCTGTCGAGGCTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

99.216

100

0.992

Multiple sequence alignment