Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   ACFMPA_RS12265 Genome accession   NZ_CP172605
Coordinates   2409388..2410191 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus sp. SG20032     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2404388..2415191
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFMPA_RS12240 (ACFMPA_12240) - 2405526..2406257 (-) 732 WP_015714234.1 glycerophosphodiester phosphodiesterase -
  ACFMPA_RS12245 (ACFMPA_12245) - 2406336..2406956 (-) 621 WP_151262328.1 N-acetylmuramoyl-L-alanine amidase -
  ACFMPA_RS12250 (ACFMPA_12250) - 2406976..2407272 (-) 297 WP_029317929.1 hypothetical protein -
  ACFMPA_RS12255 (ACFMPA_12255) - 2407580..2407732 (+) 153 WP_014480226.1 hypothetical protein -
  ACFMPA_RS12260 (ACFMPA_12260) - 2407805..2408923 (+) 1119 WP_042976476.1 NADH-dependent flavin oxidoreductase -
  ACFMPA_RS12265 (ACFMPA_12265) spo0A 2409388..2410191 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  ACFMPA_RS12270 (ACFMPA_12270) spoIVB 2410467..2411747 (-) 1281 WP_004398697.1 SpoIVB peptidase -
  ACFMPA_RS12275 (ACFMPA_12275) recN 2411922..2413652 (-) 1731 WP_015714238.1 DNA repair protein RecN Machinery gene
  ACFMPA_RS12280 (ACFMPA_12280) argR 2413689..2414138 (-) 450 WP_003230265.1 arginine repressor ArgR -
  ACFMPA_RS12285 (ACFMPA_12285) - 2414236..2415081 (-) 846 WP_003230264.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=1068222 ACFMPA_RS12265 WP_003226427.1 2409388..2410191(-) (spo0A) [Bacillus sp. SG20032]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=1068222 ACFMPA_RS12265 WP_003226427.1 2409388..2410191(-) (spo0A) [Bacillus sp. SG20032]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCTGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGACAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGTTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGATAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACTGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAATATTGATTCCATTTCCTCTTTGTTCGGTTATACTGTC
AGCATGACAAAAGCTAAACCGACAAATTCGGAATTCATTGCAATGGTTGCGGATAAGCTGAGATTAGAACATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment