Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   ACFMPA_RS11230 Genome accession   NZ_CP172605
Coordinates   2207147..2207767 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus sp. SG20032     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2202147..2212767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFMPA_RS11190 (ACFMPA_11190) - 2203278..2203784 (-) 507 WP_009967573.1 glucose PTS transporter subunit IIA -
  ACFMPA_RS11195 (ACFMPA_11195) - 2203922..2204341 (+) 420 WP_004398640.1 Hsp20/alpha crystallin family protein -
  ACFMPA_RS11200 (ACFMPA_11200) - 2204362..2204739 (-) 378 WP_004398696.1 YppG family protein -
  ACFMPA_RS11205 (ACFMPA_11205) - 2204927..2205115 (+) 189 WP_003230690.1 YppF family protein -
  ACFMPA_RS11210 (ACFMPA_11210) - 2205154..2205525 (-) 372 WP_003246080.1 YppE family protein -
  ACFMPA_RS11215 (ACFMPA_11215) - 2205571..2205816 (-) 246 WP_004398488.1 YppD family protein -
  ACFMPA_RS11220 (ACFMPA_11220) sspM 2206015..2206119 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  ACFMPA_RS11225 (ACFMPA_11225) - 2206144..2207106 (-) 963 WP_033884798.1 DUF2515 domain-containing protein -
  ACFMPA_RS11230 (ACFMPA_11230) recU 2207147..2207767 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  ACFMPA_RS11235 (ACFMPA_11235) - 2207789..2210533 (+) 2745 WP_326225672.1 PBP1A family penicillin-binding protein -
  ACFMPA_RS11240 (ACFMPA_11240) - 2210609..2211103 (-) 495 WP_009967579.1 YpoC family protein -
  ACFMPA_RS11245 (ACFMPA_11245) nth 2211100..2211759 (-) 660 WP_009967580.1 endonuclease III -
  ACFMPA_RS11250 (ACFMPA_11250) dnaD 2211778..2212476 (-) 699 WP_396464381.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=1068221 ACFMPA_RS11230 WP_004399067.1 2207147..2207767(+) (recU) [Bacillus sp. SG20032]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=1068221 ACFMPA_RS11230 WP_004399067.1 2207147..2207767(+) (recU) [Bacillus sp. SG20032]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment