Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   ACH9UM_RS10600 Genome accession   NZ_CP172594
Coordinates   2249263..2251098 (-) Length   611 a.a.
NCBI ID   WP_400091294.1    Uniprot ID   -
Organism   [Ruminococcus] torques strain CIP112193     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2244263..2256098
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH9UM_RS10585 (ACH9UM_10585) - 2245064..2247001 (-) 1938 WP_004848060.1 FAD-dependent oxidoreductase -
  ACH9UM_RS10590 (ACH9UM_10590) - 2247027..2247971 (-) 945 WP_004848058.1 NmrA family NAD(P)-binding protein -
  ACH9UM_RS10595 (ACH9UM_10595) - 2248054..2248926 (-) 873 WP_227070116.1 LysR family transcriptional regulator -
  ACH9UM_RS10600 (ACH9UM_10600) rcrQ 2249263..2251098 (-) 1836 WP_400091294.1 ABC transporter ATP-binding protein Regulator
  ACH9UM_RS10605 (ACH9UM_10605) - 2251091..2253415 (-) 2325 WP_004848052.1 ABC transporter ATP-binding protein -
  ACH9UM_RS10610 (ACH9UM_10610) - 2253412..2253867 (-) 456 WP_004848051.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACH9UM_RS10615 (ACH9UM_10615) - 2254004..2255167 (-) 1164 WP_004848049.1 DUF4317 domain-containing protein -

Sequence

Protein


Download         Length: 611 a.a.        Molecular weight: 67763.25 Da        Isoelectric Point: 6.8285

>NTDB_id=1068181 ACH9UM_RS10600 WP_400091294.1 2249263..2251098(-) (rcrQ) [[Ruminococcus] torques strain CIP112193]
MSRHGMKGAHGGMRGGAKAKDFKGSLKKLVKYMSVYKVQMLFVAVFAVCGTVFNIVGPKILGKATTEIFNGLVSKVSGGS
GMDFGKIGQILLITLGLYVVSALCSFIQGMIMTGISQKTTYRLRKDITEKVNRMPMDYFDTKPVGEVLSRVTNDVDTLGQ
SLNQSATQLITSVTTLIGVLVMMLSISPLMTVVALLILPISVGLISFVMKHSQKYFSGQQEYLGNVNGQVEEVYSGHNVI
KAFNKEDDVIREFDRTNDKLYESAWKSQFFSGMMMPVMQFVGNLGYVGVAILGGFLAIKKTIEVGDIQSFIQYVRNFTQP
IQQVAQVTNMLQLAAASSERVFEFLEEKEEDQTVEHPVSVEGLHGNVQFENVHFGYNPEKIIINDFSANVKEGQKIAIVG
PTGAGKTTMIKLLMRFYDVNSGSIKIDGHDVRDFNRSELREMFGMVLQDTWLFHGTIMDNIRYGKLDATEEEVIQAAKAA
HVHRFVQTLPGGYQMEINEEATNISQGQKQLLTIARAILADPKILILDEATSSVDTRTEVRIQKAMDNLMKGRTSFVIAH
RLSTIRDADLILVMKDGDIIEQGTHTQLLAQNGFYAELYNSQFESTDQTCA

Nucleotide


Download         Length: 1836 bp        

>NTDB_id=1068181 ACH9UM_RS10600 WP_400091294.1 2249263..2251098(-) (rcrQ) [[Ruminococcus] torques strain CIP112193]
ATGTCTAGGCACGGAATGAAAGGTGCTCATGGAGGAATGCGAGGAGGAGCAAAAGCAAAGGATTTTAAAGGCTCGCTTAA
AAAACTTGTAAAATATATGAGCGTATATAAAGTGCAGATGCTTTTTGTCGCTGTTTTCGCAGTATGCGGAACGGTATTTA
ACATTGTCGGACCGAAAATATTAGGTAAGGCTACAACAGAGATTTTTAACGGGCTTGTCAGTAAAGTATCGGGCGGATCG
GGAATGGATTTCGGAAAAATCGGACAGATCCTTCTTATTACTCTCGGTCTGTATGTAGTCAGCGCGCTTTGTTCCTTTAT
TCAGGGAATGATTATGACCGGAATCTCACAGAAAACGACGTACCGATTGAGAAAAGATATTACGGAAAAGGTCAATCGGA
TGCCGATGGATTATTTTGATACGAAGCCTGTCGGAGAGGTGCTCTCCCGTGTGACAAATGATGTAGATACTCTCGGACAG
AGTTTGAACCAAAGCGCGACGCAGCTTATTACTTCTGTGACGACTCTGATAGGAGTTCTCGTTATGATGCTTTCGATCAG
TCCGCTTATGACGGTTGTGGCGCTGTTGATCCTGCCGATTTCCGTTGGCCTGATCTCATTCGTTATGAAACATTCGCAGA
AATATTTCAGCGGACAGCAGGAATATCTCGGAAATGTAAACGGTCAGGTCGAGGAAGTGTACAGCGGACACAACGTGATC
AAGGCATTTAACAAAGAAGACGATGTGATCCGTGAATTTGACCGGACAAATGATAAATTGTATGAATCTGCATGGAAATC
CCAGTTTTTCTCTGGAATGATGATGCCGGTCATGCAGTTTGTAGGGAACTTAGGTTATGTAGGAGTAGCGATACTCGGAG
GTTTTCTGGCGATTAAAAAGACAATAGAAGTCGGAGATATCCAGTCATTTATTCAGTATGTGAGAAACTTTACACAGCCG
ATCCAACAAGTTGCTCAGGTGACAAACATGCTTCAGCTTGCGGCGGCATCATCGGAGCGGGTGTTTGAATTCCTCGAAGA
AAAGGAAGAAGATCAGACGGTTGAACACCCTGTTTCGGTAGAAGGACTTCACGGAAATGTACAGTTTGAAAATGTTCATT
TCGGATACAATCCGGAAAAGATCATCATTAACGATTTCTCTGCAAATGTAAAAGAAGGTCAGAAAATCGCAATCGTCGGT
CCTACAGGAGCCGGAAAAACAACGATGATCAAACTGCTCATGCGCTTTTATGATGTAAACAGCGGTTCGATCAAGATCGA
CGGCCATGACGTAAGAGACTTCAACAGAAGCGAACTAAGAGAAATGTTCGGAATGGTACTTCAAGATACATGGCTCTTCC
ACGGAACGATCATGGATAACATCCGTTACGGAAAACTCGACGCAACAGAGGAAGAAGTTATACAGGCAGCAAAAGCAGCA
CATGTTCACCGTTTCGTCCAGACACTTCCGGGAGGCTATCAGATGGAAATCAATGAAGAAGCAACAAACATCTCACAAGG
ACAAAAACAGCTTCTTACGATCGCAAGAGCAATACTTGCAGATCCGAAGATCCTCATTCTTGACGAAGCGACAAGTTCCG
TCGATACAAGAACAGAAGTAAGAATCCAAAAAGCAATGGATAATTTGATGAAAGGCAGAACAAGTTTCGTTATCGCCCAT
AGATTATCGACAATCCGAGACGCAGATCTCATTCTCGTTATGAAAGACGGCGATATCATCGAACAAGGAACACACACACA
ACTCCTCGCCCAAAACGGCTTCTACGCCGAACTATACAATTCACAGTTTGAATCAACAGATCAGACCTGCGCATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(384-532)

ABC transporter transmembrane region (ABC_membrane)

(40-320)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

51.63

95.417

0.493

Multiple sequence alignment