Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   ACIA35_RS02650 Genome accession   NZ_CP172554
Coordinates   532573..534375 (-) Length   600 a.a.
NCBI ID   WP_003624726.1    Uniprot ID   A0AAV5PF04
Organism   Lactobacillus delbrueckii subsp. bulgaricus strain 771     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 527573..539375
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACIA35_RS02625 (ACIA35_02625) - 528839..529639 (+) 801 WP_003621136.1 HAD family hydrolase -
  ACIA35_RS02630 (ACIA35_02630) - 529665..530318 (+) 654 WP_014565368.1 metal ABC transporter ATP-binding protein -
  ACIA35_RS02635 (ACIA35_02635) - 530318..531115 (+) 798 WP_003621140.1 metal ABC transporter permease -
  ACIA35_RS02640 (ACIA35_02640) - 531252..531746 (+) 495 WP_396598508.1 zinc-ribbon domain-containing protein -
  ACIA35_RS02645 (ACIA35_02645) - 531871..532503 (+) 633 Protein_522 alpha-hydroxy-acid oxidizing protein -
  ACIA35_RS02650 (ACIA35_02650) pepF 532573..534375 (-) 1803 WP_003624726.1 oligoendopeptidase F Regulator
  ACIA35_RS02655 (ACIA35_02655) - 534551..535690 (+) 1140 WP_172757986.1 LCP family protein -
  ACIA35_RS02660 (ACIA35_02660) - 535809..536186 (+) 378 WP_003621149.1 hypothetical protein -
  ACIA35_RS02665 (ACIA35_02665) - 536201..537745 (+) 1545 WP_003624371.1 ABC-F family ATP-binding cassette domain-containing protein -
  ACIA35_RS02670 (ACIA35_02670) - 537799..538554 (+) 756 WP_396598591.1 threonine/serine exporter family protein -
  ACIA35_RS02675 (ACIA35_02675) - 538557..539048 (+) 492 WP_014565360.1 threonine/serine exporter family protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 68242.06 Da        Isoelectric Point: 4.4766

>NTDB_id=1068006 ACIA35_RS02650 WP_003624726.1 532573..534375(-) (pepF) [Lactobacillus delbrueckii subsp. bulgaricus strain 771]
MEIPYRSEVPKEQTWDLTRVFKTEADWEAAFKAVKQEVKALPALEDGFTESAAVLYDRLTQIFAVDRRLSKIYVYASMAS
DVDTSNQKKLALNSRGQSLAAEYQAAVAFIQPAVLALGKEALDAFFKEEPRLENYRHYLEQIVKQEEHVLPAEEEKLVSA
AGDALSASANTFNVLTNSDLQFPYIEDEDGEAVELTEANYDILIQSQNREVREDAFDALYAGYGQFASTFASTLAGNVKA
HNFDAQTHHYQDALAAALSENNIPVDVYNQLLTSVHKHLDLLHRYVNLREEILDLKGDLQMWDMYVPITGKPSLSYTFAE
AKAQAREALQVLGEDYVKHVDYLFNNRCIDHVANMHKQSGAYSGGAYDTDAYVLLNWQGDLDSLYTLVHETGHSVHSMYT
RENQPYVYGDYPIFVAEIASTTNENLLTNYFLDRVTDPKTRAFLLNYYLSSFKGTVYRQTQFAEFEKFIHESDQAGEALT
ADYLCGFYDRLNQQYYGPAISLGSDIDLEWARIPHFYYNFYVYQYATGFAAATALANKITYGSQEDKEKYLDFLKSGSSD
YPINIMQKAGVDMTKSDYLEDAFKVFAERLDEFTDLIKKL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=1068006 ACIA35_RS02650 WP_003624726.1 532573..534375(-) (pepF) [Lactobacillus delbrueckii subsp. bulgaricus strain 771]
ATGGAAATCCCTTATCGCAGTGAGGTTCCCAAAGAACAGACCTGGGACTTGACCCGGGTCTTCAAGACTGAAGCGGACTG
GGAGGCCGCCTTTAAAGCTGTCAAGCAGGAAGTCAAGGCCCTGCCGGCCTTGGAAGACGGCTTTACGGAGAGCGCGGCCG
TCCTCTATGACCGCTTGACCCAGATTTTTGCCGTTGACCGCCGCCTGTCCAAGATCTACGTCTATGCCAGCATGGCCAGC
GACGTCGACACCAGCAACCAGAAGAAGCTGGCCCTCAATTCCCGCGGCCAGAGCCTGGCCGCTGAATACCAGGCGGCTGT
TGCCTTCATTCAGCCGGCTGTTTTAGCCTTGGGGAAAGAGGCCCTGGACGCCTTTTTCAAGGAAGAGCCAAGACTGGAAA
ACTACCGGCACTATTTGGAACAGATCGTCAAGCAAGAAGAGCACGTTTTGCCAGCTGAAGAGGAGAAGCTGGTATCGGCG
GCCGGGGATGCCCTGTCAGCTTCGGCCAACACCTTCAACGTCTTGACCAACTCCGATTTGCAATTCCCTTACATTGAAGA
TGAAGACGGGGAAGCAGTGGAACTGACGGAAGCCAACTACGACATCTTGATCCAGTCCCAGAACCGGGAAGTCAGAGAGG
ACGCCTTTGACGCCCTTTACGCTGGCTACGGCCAGTTCGCGTCAACTTTTGCCTCAACCTTGGCCGGCAATGTCAAGGCC
CACAACTTTGATGCCCAGACCCACCACTACCAGGACGCCTTAGCCGCGGCTCTGTCAGAAAACAACATCCCTGTCGACGT
CTACAACCAGCTTTTGACTAGCGTCCACAAGCACCTGGACCTCCTCCACCGCTATGTCAACTTGCGCGAAGAGATCCTGG
ACCTGAAGGGCGACCTGCAAATGTGGGACATGTACGTGCCGATCACGGGCAAGCCAAGCCTCAGCTACACTTTCGCTGAA
GCCAAGGCCCAGGCCAGAGAGGCCCTGCAGGTTTTGGGCGAGGACTATGTCAAACACGTCGACTACCTCTTCAATAACCG
CTGCATCGACCACGTGGCTAACATGCACAAGCAAAGCGGGGCCTACTCCGGCGGGGCTTATGACACCGACGCCTATGTGC
TCTTGAACTGGCAGGGGGACCTGGATTCCCTCTACACCCTGGTCCACGAGACCGGCCACTCAGTCCACAGCATGTACACC
CGGGAAAACCAGCCATACGTGTACGGGGACTATCCGATCTTTGTCGCGGAAATTGCCTCAACGACCAATGAAAACCTGCT
GACCAACTACTTCCTGGACCGGGTGACGGATCCAAAGACCCGGGCCTTCCTGCTCAACTACTACTTGAGCTCCTTTAAGG
GAACGGTCTACCGGCAGACCCAGTTCGCGGAATTCGAGAAGTTCATTCATGAAAGCGACCAGGCGGGTGAAGCCTTGACG
GCTGACTACCTGTGCGGCTTCTACGACCGGCTCAACCAGCAGTACTACGGCCCAGCGATCAGCCTGGGCAGCGACATCGA
CCTGGAATGGGCCCGGATCCCCCACTTCTATTACAACTTCTACGTCTACCAGTACGCGACCGGCTTTGCCGCGGCGACTG
CCCTGGCTAACAAGATTACTTACGGCAGCCAGGAAGACAAGGAGAAGTACCTGGACTTCCTTAAGTCCGGCTCTAGCGAC
TACCCGATCAACATCATGCAGAAGGCCGGCGTCGACATGACCAAGTCCGACTACCTGGAAGATGCCTTCAAGGTCTTTGC
GGAAAGACTGGACGAATTTACTGACTTAATCAAAAAATTGTAG

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(115-182)

Peptidase family M3 (Peptidase_M3)

(203-584)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.832

99

0.493

Multiple sequence alignment