Detailed information NTG0106770

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: ACAM55_RS03995
• Genome accession: NZ_AP028664
• Coordinates: 824458..825690 (-)
• Length: 410 a.a.
• NCBI ID: WP_369654775.1
• Uniprot ID: -
• Organism: Variovorax sp. V213
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 819458..830690

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACAM55_RS03975 (GmRootV213_07800)	-	820192..820656 (-)	465	WP_369654771.1	DUF962 domain-containing protein	-
ACAM55_RS03980 (GmRootV213_07810)	-	820822..821532 (+)	711	WP_369654772.1	LuxR C-terminal-related transcriptional regulator	-
ACAM55_RS03985 (GmRootV213_07820)	-	821544..823304 (+)	1761	WP_369654773.1	hybrid sensor histidine kinase/response regulator	-
ACAM55_RS03990 (GmRootV213_07830)	-	823606..824430 (+)	825	WP_369654774.1	hypothetical protein	-
ACAM55_RS03995 (GmRootV213_07840)	pilA	824458..825690 (-)	1233	WP_369654775.1	signal recognition particle-docking protein FtsY	Machinery gene
ACAM55_RS04000 (GmRootV213_07850)	-	825768..827168 (+)	1401	WP_369656331.1	M16 family metallopeptidase	-
ACAM55_RS04005 (GmRootV213_07860)	-	827185..828534 (+)	1350	WP_369654776.1	M16 family metallopeptidase	-
ACAM55_RS04010 (GmRootV213_07870)	-	828551..829468 (-)	918	WP_369654777.1	LysR family transcriptional regulator ArgP	-
ACAM55_RS04015 (GmRootV213_07880)	-	829550..830185 (+)	636	WP_369654778.1	LysE/ArgO family amino acid transporter	-

Sequence

Protein

• Length: 410 a.a.
• Molecular weight: 42756.33 Da
• Isoelectric Point: 5.5465

>NTDB_id=106770 ACAM55_RS03995 WP_369654775.1 824458..825690(-) (pilA) [Variovorax sp. V213]
MFSFFKKKPPAESPAAPAPSPVAEPAPAPEPAPARSVFSPSSWFGSKPAVEEAAPPPAVPAPPPPVAPPPPPVAAPAAPT
LAPVPAPTPTPAPPGPDAPLPALVTDTAMAAERKGWFDKLKTGLRKTGTGIQAVFVNAQIDDALYEELESALLMADTGVK
ATEFLLDDLRGRVKRQMATDAAQVKRLLADAITDLLKPLEKPLVIGQFTPTVIMVAGVNGAGKTTSIGKLTKHLANEGAS
VLLAAADTFRAAAREQLLVWADRNTVEIVSQEGGDPSAVSFDAVTAGKARGKDVVLVDTAGRLPTQLHLMDELKKIKRVV
TKADATAPHEVLLVIDGNTGQNALAQVRAFDETLGLTGLVVTKLDGTAKGGVLCAIARERPIPVYFIGVGERLEDLETFN
AREFAQALLG

Nucleotide

• Length: 1233 bp

>NTDB_id=106770 ACAM55_RS03995 WP_369654775.1 824458..825690(-) (pilA) [Variovorax sp. V213]
ATGTTCAGTTTCTTCAAGAAAAAACCGCCTGCCGAATCACCGGCCGCGCCGGCACCCTCCCCGGTCGCCGAGCCTGCACC
GGCCCCCGAGCCCGCGCCTGCGCGCTCGGTGTTCTCGCCATCGAGCTGGTTCGGCTCGAAACCTGCGGTAGAGGAAGCGG
CGCCTCCGCCCGCAGTGCCGGCCCCACCGCCCCCAGTGGCGCCTCCGCCGCCCCCCGTAGCCGCTCCCGCTGCGCCCACT
CTCGCCCCCGTGCCGGCGCCAACGCCGACACCTGCCCCCCCCGGGCCGGACGCGCCCCTCCCCGCCCTCGTCACCGATAC
GGCCATGGCGGCCGAGCGCAAGGGCTGGTTCGACAAGCTCAAGACGGGCCTGCGAAAGACCGGCACCGGCATCCAGGCGG
TGTTCGTCAACGCCCAGATCGACGACGCACTGTACGAGGAGCTCGAATCGGCCCTGCTGATGGCCGACACCGGCGTCAAG
GCCACCGAGTTTCTGCTCGACGACCTGCGCGGCCGCGTCAAGCGACAGATGGCGACCGACGCGGCGCAAGTGAAGCGGCT
GCTGGCCGACGCCATCACCGACCTGCTCAAGCCCCTCGAGAAGCCGCTGGTGATCGGCCAGTTCACGCCGACAGTGATCA
TGGTGGCCGGGGTGAACGGCGCGGGCAAGACCACCTCCATCGGCAAGCTCACCAAGCACCTGGCCAACGAGGGCGCCTCG
GTGCTGCTGGCGGCGGCCGACACCTTCCGGGCGGCGGCGCGCGAACAGCTGCTGGTCTGGGCCGACCGCAACACGGTCGA
GATCGTGAGCCAGGAGGGCGGCGACCCCTCCGCCGTGAGCTTCGACGCGGTGACGGCCGGCAAGGCGCGCGGCAAGGACG
TGGTGCTGGTCGACACCGCGGGCCGCCTGCCCACGCAGCTGCACCTGATGGACGAGCTCAAGAAGATCAAGCGCGTCGTC
ACCAAGGCCGACGCCACGGCCCCGCACGAGGTGCTGCTGGTGATCGACGGCAACACCGGGCAGAACGCCCTGGCGCAAGT
CAGGGCCTTCGACGAGACGCTGGGCCTCACCGGCCTGGTGGTGACCAAGCTCGACGGCACGGCCAAGGGCGGCGTGCTCT
GCGCCATTGCGCGCGAGCGGCCGATTCCGGTCTATTTCATCGGCGTGGGCGAAAGGCTCGAAGACCTCGAGACCTTCAAC
GCACGCGAGTTCGCGCAGGCTTTGCTGGGCTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (210-410)

• SRP54-type protein, helical bundle domain (SRP54_N) (128-191)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	48.227	100	0.498