Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACFSN5_RS09580 Genome accession   NZ_CP172427
Coordinates   2079413..2080777 (-) Length   454 a.a.
NCBI ID   WP_165212325.1    Uniprot ID   -
Organism   Streptococcus sp. ZJ 1593     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2074413..2085777
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFSN5_RS09555 (ACFSN5_09555) - 2074774..2075484 (-) 711 WP_165212181.1 CPBP family intramembrane glutamic endopeptidase -
  ACFSN5_RS09560 (ACFSN5_09560) - 2075500..2075955 (-) 456 WP_165212179.1 hypothetical protein -
  ACFSN5_RS09565 (ACFSN5_09565) - 2076801..2077661 (-) 861 WP_004229784.1 DegV family protein -
  ACFSN5_RS09570 (ACFSN5_09570) - 2077812..2078324 (-) 513 WP_165212177.1 NYN domain-containing protein -
  ACFSN5_RS09575 (ACFSN5_09575) rlmB 2078679..2079416 (-) 738 WP_165329420.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ACFSN5_RS09580 (ACFSN5_09580) radA 2079413..2080777 (-) 1365 WP_165212325.1 DNA repair protein RadA Machinery gene
  ACFSN5_RS09585 (ACFSN5_09585) - 2080802..2081248 (-) 447 WP_165212173.1 dUTP diphosphatase -
  ACFSN5_RS09590 (ACFSN5_09590) - 2081712..2082740 (+) 1029 WP_165329419.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  ACFSN5_RS09595 (ACFSN5_09595) galU 2082777..2083679 (+) 903 WP_165212169.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  ACFSN5_RS09600 (ACFSN5_09600) - 2084142..2084744 (-) 603 WP_165212167.1 AAA family ATPase -
  ACFSN5_RS09605 (ACFSN5_09605) - 2084754..2085611 (-) 858 WP_165212165.1 class II fructose-bisphosphate aldolase -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 49663.05 Da        Isoelectric Point: 6.6537

>NTDB_id=1067692 ACFSN5_RS09580 WP_165212325.1 2079413..2080777(-) (radA) [Streptococcus sp. ZJ 1593]
MAKKKSIFVCQECGYNSPKYLGRCPNCGSWSSFVEEKEVEEVKNARVSLTGEKTKPTKLKDVSSIDYARTKTNMEEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLANKGTVLYVSGEESAEQIKLRSERLGDIDNEFYIYAETNMQNIRSEIE
RLKPDFLIIDSIQTVMSPEITSVQGSVSQVREVTAELMQLAKSNNIATFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQTGGLVEVLNPSQLFLEERLDGATGSAIVVTMEGTRPILAEVQALVTPTVFGNAK
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEAPTNAQDAFIGEIGLTGEIR
RVNRIEQRINEAAKLGFTKIYAPKNALHGIDIPKNIEVIGVSTVGEVLKKVFKS

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=1067692 ACFSN5_RS09580 WP_165212325.1 2079413..2080777(-) (radA) [Streptococcus sp. ZJ 1593]
ATCGCTAAGAAAAAATCAATCTTTGTCTGTCAGGAATGTGGTTACAATTCCCCCAAATATCTGGGGCGTTGTCCTAACTG
TGGCTCTTGGTCCTCTTTTGTTGAAGAAAAGGAAGTCGAGGAAGTCAAGAATGCTCGAGTGTCTTTGACAGGGGAAAAAA
CAAAGCCAACCAAGTTAAAAGATGTCTCCTCTATTGATTATGCCAGAACCAAGACGAACATGGAGGAGTTTAACCGAGTC
CTCGGTGGCGGTGTCGTGCCCGGCAGTCTGGTTCTTATTGGTGGAGATCCTGGTATCGGGAAGTCAACTCTCTTGCTGCA
AGTCTCGACCCAGCTGGCCAATAAGGGAACGGTGCTCTATGTGTCAGGGGAAGAGTCGGCCGAGCAAATCAAGCTGCGCA
GTGAGCGCCTAGGCGATATTGACAATGAATTTTACATTTACGCTGAAACGAATATGCAAAATATCCGCTCTGAAATCGAG
CGCCTGAAACCGGATTTTCTGATTATTGACTCTATCCAGACGGTCATGAGTCCTGAAATTACCAGTGTTCAAGGTTCTGT
TTCTCAGGTGCGGGAGGTGACGGCTGAGCTTATGCAGCTGGCCAAGAGCAATAATATTGCCACCTTTATTGTGGGTCATG
TCACCAAGGAAGGGACCTTGGCTGGTCCGCGGATGCTGGAGCACATGGTCGATACGGTTCTCTATTTTGAAGGGGAACGT
CATCATACCTTTCGAATATTGCGGGCGGTGAAAAACCGCTTTGGCTCAACCAATGAGATTGGGATTTTTGAAATGCAGAC
GGGCGGTCTGGTTGAGGTCCTCAATCCTAGTCAGCTCTTCTTGGAAGAACGCTTGGATGGGGCGACAGGCTCGGCTATTG
TTGTCACCATGGAAGGAACACGTCCGATTTTAGCTGAGGTTCAAGCCCTAGTCACACCGACGGTTTTTGGCAATGCCAAA
CGAACCACGACAGGACTCGATTTCAATCGGGTTAGCCTGATTATGGCCGTCTTGGAAAAACGCTGCGGTCTCCTTCTGCA
AAATCAAGATGCTTATCTCAAGTCAGCTGGTGGGGTCAAGCTGGACGAGCCAGCTATTGATCTGGCGGTGGCAGTCGCTA
TTGCATCTTCCTACAAGGAAGCACCGACTAATGCTCAGGATGCCTTCATCGGTGAAATCGGTCTGACAGGAGAAATTCGC
CGTGTCAATCGAATTGAGCAACGCATCAATGAGGCTGCTAAACTTGGTTTTACCAAAATCTATGCACCTAAGAATGCCCT
GCATGGGATTGATATCCCCAAAAACATTGAAGTCATTGGAGTTTCAACAGTCGGGGAAGTTCTGAAGAAAGTGTTTAAAT
CATGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)

AAA domain (AAA_25)

(58-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

88.053

99.559

0.877
  radA Streptococcus pneumoniae D39

88.053

99.559

0.877
  radA Streptococcus pneumoniae R6

88.053

99.559

0.877
  radA Streptococcus pneumoniae TIGR4

88.053

99.559

0.877
  radA Streptococcus mitis NCTC 12261

88.053

99.559

0.877
  radA Streptococcus mitis SK321

87.832

99.559

0.874
  radA Bacillus subtilis subsp. subtilis str. 168

63.355

99.78

0.632

Multiple sequence alignment