Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   ACAM55_RS02850 Genome accession   NZ_AP028664
Coordinates   570402..570800 (+) Length   132 a.a.
NCBI ID   WP_028259709.1    Uniprot ID   A0A0Q6MYM8
Organism   Variovorax sp. V213     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 565402..575800
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACAM55_RS02825 (GmRootV213_05490) - 565895..566131 (+) 237 WP_007838304.1 Fis family transcriptional regulator -
  ACAM55_RS02830 (GmRootV213_05500) purH 566148..567755 (+) 1608 WP_369654577.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase -
  ACAM55_RS02835 (GmRootV213_05510) hemL 567781..569076 (-) 1296 WP_369654578.1 glutamate-1-semialdehyde 2,1-aminomutase -
  ACAM55_RS02840 (GmRootV213_05520) - 569076..570038 (-) 963 WP_369654579.1 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase -
  ACAM55_RS02845 (GmRootV213_05530) - 570150..570320 (+) 171 WP_007838397.1 rubredoxin -
  ACAM55_RS02850 (GmRootV213_05540) pilG 570402..570800 (+) 399 WP_028259709.1 PleD family two-component system response regulator Regulator
  ACAM55_RS02855 (GmRootV213_05550) - 570800..571165 (+) 366 WP_028259710.1 response regulator -
  ACAM55_RS02860 (GmRootV213_05560) - 571185..571718 (+) 534 WP_369654580.1 chemotaxis protein CheW -
  ACAM55_RS02865 (GmRootV213_05570) - 571761..574085 (+) 2325 WP_369654581.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14669.81 Da        Isoelectric Point: 7.2426

>NTDB_id=106769 ACAM55_RS02850 WP_028259709.1 570402..570800(+) (pilG) [Variovorax sp. V213]
MGPNGSGYKVLVIDDSNTIRRSAEIFLKQGGHEVLLAEDGFDALSKVNDHKPHLIFCDILMPRLDGYQTCAIIKRNAQFS
NVPVVMLSSKDGVFDKARGRMVGSQDYLTKPFTKDQLLQAVQQFGIVQQEAQ

Nucleotide


Download         Length: 399 bp        

>NTDB_id=106769 ACAM55_RS02850 WP_028259709.1 570402..570800(+) (pilG) [Variovorax sp. V213]
ATGGGGCCGAATGGATCAGGTTACAAGGTGCTGGTCATCGATGACAGCAATACGATCCGGCGCAGTGCCGAAATATTTCT
GAAGCAGGGCGGACACGAGGTTCTCCTTGCGGAGGATGGCTTTGACGCGCTCTCGAAGGTCAACGACCACAAGCCGCATC
TGATTTTCTGCGACATCCTCATGCCGCGCCTCGACGGCTACCAGACCTGCGCCATCATCAAGCGCAATGCTCAGTTCTCC
AATGTTCCGGTCGTGATGCTTTCCTCGAAAGACGGCGTCTTCGACAAGGCCCGCGGCCGCATGGTCGGATCGCAAGACTA
CCTGACCAAACCTTTCACCAAAGACCAATTGCTGCAGGCCGTGCAGCAGTTTGGCATCGTTCAACAGGAAGCGCAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q6MYM8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

62.281

86.364

0.538

Multiple sequence alignment