Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   ACFSN5_RS06170 Genome accession   NZ_CP172427
Coordinates   1343342..1344211 (-) Length   289 a.a.
NCBI ID   WP_165329077.1    Uniprot ID   -
Organism   Streptococcus sp. ZJ 1593     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1338342..1349211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFSN5_RS06155 (ACFSN5_06155) pheT 1338978..1341383 (-) 2406 WP_165213301.1 phenylalanine--tRNA ligase subunit beta -
  ACFSN5_RS06160 (ACFSN5_06160) - 1341440..1341961 (-) 522 WP_165213299.1 GNAT family N-acetyltransferase -
  ACFSN5_RS06165 (ACFSN5_06165) pheS 1341982..1343025 (-) 1044 WP_165329131.1 phenylalanine--tRNA ligase subunit alpha -
  ACFSN5_RS06170 (ACFSN5_06170) endA 1343342..1344211 (-) 870 WP_165329077.1 DNA/RNA non-specific endonuclease Machinery gene
  ACFSN5_RS06175 (ACFSN5_06175) - 1344266..1344457 (-) 192 WP_165329078.1 DNA-directed RNA polymerase subunit beta -
  ACFSN5_RS06180 (ACFSN5_06180) murA 1344457..1345725 (-) 1269 WP_165329079.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  ACFSN5_RS06185 (ACFSN5_06185) - 1345787..1346023 (-) 237 WP_241154233.1 DUF1146 family protein -
  ACFSN5_RS06190 (ACFSN5_06190) - 1346373..1346792 (-) 420 WP_165213289.1 F0F1 ATP synthase subunit epsilon -
  ACFSN5_RS06195 (ACFSN5_06195) atpD 1346805..1348211 (-) 1407 WP_165213287.1 F0F1 ATP synthase subunit beta -

Sequence

Protein


Download         Length: 289 a.a.        Molecular weight: 31910.65 Da        Isoelectric Point: 9.7823

>NTDB_id=1067676 ACFSN5_RS06170 WP_165329077.1 1343342..1344211(-) (endA) [Streptococcus sp. ZJ 1593]
MVKKSKSTMKREQKALLSLVSLVVFLILGLLATTDQLSDQNPIKQVAQQLTGEQQKRSKFSDEAPSRDLADSVLTQEVRN
QLPAEISWNGSGAYILNGNKTNLDARVASTPYVNNQTKVVQGQTVPSLANALLTKSTRQYRNRQETGNGSTDWTPAGWHQ
RTGLSGVYDHAIDRGHLIAYSLAGSLRGFDASTSNPANVAVQTAWANEASSENSTGQNYYETQIRKALDKRKRVRYRVTL
IYQGDNLIASGSHLEAKSSDGSLEFNVFIPNVQRDLILDYYTGQVKLES

Nucleotide


Download         Length: 870 bp        

>NTDB_id=1067676 ACFSN5_RS06170 WP_165329077.1 1343342..1344211(-) (endA) [Streptococcus sp. ZJ 1593]
ATGGTGAAAAAATCAAAATCAACGATGAAACGGGAGCAAAAAGCCCTGCTTTCGCTGGTCAGTTTAGTTGTCTTTTTAAT
ACTGGGTTTGCTGGCAACTACTGATCAATTATCCGATCAAAATCCAATCAAGCAAGTAGCTCAGCAGCTAACGGGAGAGC
AGCAGAAAAGGTCTAAGTTTAGTGATGAGGCTCCGAGTCGAGACTTAGCCGATAGTGTGCTGACTCAAGAAGTTAGAAAC
CAACTCCCGGCTGAAATTAGCTGGAATGGCTCAGGAGCTTATATTCTTAATGGGAATAAAACCAATTTGGACGCTCGGGT
GGCTAGTACTCCCTATGTCAACAATCAGACAAAAGTCGTCCAAGGTCAGACGGTCCCAAGTCTCGCCAATGCCCTCCTGA
CCAAATCTACCCGTCAGTATCGTAACCGTCAGGAAACAGGTAACGGCTCAACAGACTGGACACCGGCAGGCTGGCATCAG
CGAACGGGTCTTTCTGGTGTCTATGATCATGCCATAGATCGTGGCCATTTGATTGCTTATTCCTTAGCGGGTAGTCTAAG
AGGTTTCGATGCTTCAACAAGCAATCCGGCCAATGTCGCAGTCCAGACAGCCTGGGCTAATGAAGCCAGCAGTGAGAATT
CGACGGGACAGAATTACTATGAAACCCAGATCCGCAAGGCCCTGGATAAGCGCAAGCGGGTTCGCTACCGAGTGACCTTA
ATTTATCAAGGCGACAACTTAATTGCCTCAGGCAGCCATCTGGAAGCCAAGTCATCCGATGGCAGTCTGGAATTTAATGT
CTTTATTCCTAACGTGCAACGGGATTTGATACTGGATTACTACACAGGACAGGTGAAGCTTGAGTCCTGA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(94-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

64.783

79.585

0.516
  endA Streptococcus pneumoniae D39

64.783

79.585

0.516
  endA Streptococcus pneumoniae R6

64.783

79.585

0.516
  endA Streptococcus pneumoniae TIGR4

64.783

79.585

0.516

Multiple sequence alignment