Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   ACFSN5_RS05880 Genome accession   NZ_CP172427
Coordinates   1271342..1271647 (-) Length   101 a.a.
NCBI ID   WP_165329053.1    Uniprot ID   -
Organism   Streptococcus sp. ZJ 1593     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1272639..1283068 1271342..1271647 flank 992


Gene organization within MGE regions


Location: 1271342..1283068
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACFSN5_RS05880 (ACFSN5_05880) HI0659 1271342..1271647 (-) 306 WP_165329053.1 helix-turn-helix domain-containing protein Machinery gene
  ACFSN5_RS05885 (ACFSN5_05885) - 1271842..1272594 (-) 753 WP_165329054.1 hypothetical protein -
  ACFSN5_RS05890 (ACFSN5_05890) - 1272639..1274231 (-) 1593 WP_241154240.1 TIGR04141 family sporadically distributed protein -
  ACFSN5_RS05895 (ACFSN5_05895) - 1274245..1275459 (-) 1215 WP_241154241.1 restriction endonuclease subunit S -
  ACFSN5_RS05900 (ACFSN5_05900) - 1275493..1276374 (-) 882 WP_165329056.1 HNH endonuclease -
  ACFSN5_RS05905 (ACFSN5_05905) - 1276378..1277994 (-) 1617 WP_165329057.1 ATP-dependent endonuclease -
  ACFSN5_RS05910 (ACFSN5_05910) - 1278248..1279240 (-) 993 WP_165329058.1 DUF3644 domain-containing protein -
  ACFSN5_RS05915 (ACFSN5_05915) - 1280118..1281254 (-) 1137 WP_165329059.1 hypothetical protein -
  ACFSN5_RS05920 (ACFSN5_05920) - 1281962..1283068 (+) 1107 WP_165329060.1 hypothetical protein -

Sequence

Protein


Download         Length: 101 a.a.        Molecular weight: 11249.06 Da        Isoelectric Point: 8.6807

>NTDB_id=1067675 ACFSN5_RS05880 WP_165329053.1 1271342..1271647(-) (HI0659) [Streptococcus sp. ZJ 1593]
MIKNNPAIGRRWEDVQAELFTPEELRESDLRVAVMLELIKARQEKGISQKKLEQLSGVSQPVIARMESGKTSPQLDTVLK
VLASLGKTLAVVPLEQKESHS

Nucleotide


Download         Length: 306 bp        

>NTDB_id=1067675 ACFSN5_RS05880 WP_165329053.1 1271342..1271647(-) (HI0659) [Streptococcus sp. ZJ 1593]
ATGATTAAGAACAATCCAGCTATTGGCAGACGCTGGGAAGATGTTCAAGCAGAATTATTTACACCTGAGGAATTGCGTGA
AAGTGATTTGAGAGTGGCTGTTATGCTTGAGCTCATTAAGGCTAGACAGGAAAAGGGCATCAGTCAAAAGAAATTGGAGC
AGCTCAGTGGCGTTAGCCAGCCTGTTATTGCTCGGATGGAGTCTGGAAAAACCAGTCCGCAACTCGATACCGTTTTGAAA
GTGCTAGCCAGTCTTGGAAAGACCTTAGCTGTTGTTCCCTTGGAACAAAAAGAGAGTCATTCGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(39-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

57.609

91.089

0.525

Multiple sequence alignment