Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   ACHGMI_RS16270 Genome accession   NZ_CP172417
Coordinates   2952722..2953468 (-) Length   248 a.a.
NCBI ID   WP_026113741.1    Uniprot ID   A0AAQ3EXH2
Organism   Bacillus subtilis strain AKPS2     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2947722..2958468
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHGMI_RS16245 mreC 2948128..2949000 (-) 873 WP_003222609.1 rod shape-determining protein MreC -
  ACHGMI_RS16250 mreB 2949031..2950044 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  ACHGMI_RS16255 radC 2950136..2950831 (-) 696 WP_041351757.1 RadC family protein -
  ACHGMI_RS16260 maf 2950868..2951437 (-) 570 WP_017697539.1 Maf family nucleotide pyrophosphatase -
  ACHGMI_RS16265 spoIIB 2951590..2952588 (-) 999 WP_017697540.1 stage II sporulation protein SpoIIB -
  ACHGMI_RS16270 comC 2952722..2953468 (-) 747 WP_026113741.1 prepilin peptidase Machinery gene
  ACHGMI_RS16275 folC 2953608..2954900 (-) 1293 WP_003229640.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  ACHGMI_RS16280 valS 2954960..2957602 (-) 2643 WP_017697542.1 valine--tRNA ligase -
  ACHGMI_RS16285 - 2958050..2958241 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26422.99 Da        Isoelectric Point: 9.7944

>NTDB_id=1067604 ACHGMI_RS16270 WP_026113741.1 2952722..2953468(-) (comC) [Bacillus subtilis strain AKPS2]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDLHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=1067604 ACHGMI_RS16270 WP_026113741.1 2952722..2953468(-) (comC) [Bacillus subtilis strain AKPS2]
ATGCTATCCATTCTTTTTATCTTTGGGCTTATTCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCTCGTTCATCATGCCCGTTTTGCCGGCGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCCGCAGGAATACGTTTTGGCACGTCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATCTTCATTTTATGCTGATTCCAAATCGAATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCGGCAGCCGGATTTCTGTTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGGGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCTGTTTTAATAGGTGCATTATATGGAGCGGCAGCCGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTCGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

99.194

100

0.992

Multiple sequence alignment