Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   ACHGMI_RS14320 Genome accession   NZ_CP172417
Coordinates   2618745..2619548 (+) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain AKPS2     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2613745..2624548
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHGMI_RS14300 yqxC 2613855..2614700 (+) 846 WP_003230264.1 TlyA family RNA methyltransferase -
  ACHGMI_RS14305 argR 2614798..2615247 (+) 450 WP_017696434.1 arginine repressor ArgR -
  ACHGMI_RS14310 recN 2615284..2617014 (+) 1731 WP_017696435.1 DNA repair protein RecN Machinery gene
  ACHGMI_RS14315 spoIVB 2617189..2618469 (+) 1281 WP_017696436.1 SpoIVB peptidase -
  ACHGMI_RS14320 spo0A 2618745..2619548 (+) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  ACHGMI_RS14325 yqiG 2620013..2621131 (-) 1119 WP_017696437.1 NADH-dependent flavin oxidoreductase -
  ACHGMI_RS14330 - 2621204..2621356 (-) 153 WP_014480226.1 hypothetical protein -
  ACHGMI_RS14335 - 2621667..2621963 (+) 297 WP_014480225.1 hypothetical protein -
  ACHGMI_RS14340 yqiI 2621983..2622603 (+) 621 WP_080031089.1 N-acetylmuramoyl-L-alanine amidase family protein -
  ACHGMI_RS14345 glpQB 2622682..2623413 (+) 732 WP_017696440.1 glycerophosphodiester phosphodiesterase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=1067596 ACHGMI_RS14320 WP_003226427.1 2618745..2619548(+) (spo0A) [Bacillus subtilis strain AKPS2]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=1067596 ACHGMI_RS14320 WP_003226427.1 2618745..2619548(+) (spo0A) [Bacillus subtilis strain AKPS2]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGTCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGTCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTTGGTTATACTGTC
AGCATGACAAAAGCTAAACCTACCAACAGTGAATTCATTGCAATGGTTGCGGATAAGCTGAGGTTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment