Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   ACHGMI_RS07710 Genome accession   NZ_CP172417
Coordinates   1430041..1430994 (-) Length   317 a.a.
NCBI ID   WP_014476425.1    Uniprot ID   A0A0K6M9I2
Organism   Bacillus subtilis strain AKPS2     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1425041..1435994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHGMI_RS07680 appD 1425160..1426146 (-) 987 WP_003232965.1 oligopeptide ABC transporter ATP-binding protein AppD -
  ACHGMI_RS07685 yjaZ 1426338..1427123 (-) 786 WP_041345475.1 DUF2268 domain-containing protein -
  ACHGMI_RS07690 fabF 1427199..1428440 (-) 1242 WP_003244890.1 beta-ketoacyl-ACP synthase II -
  ACHGMI_RS07695 fabH 1428463..1429401 (-) 939 WP_003232971.1 beta-ketoacyl-ACP synthase III -
  ACHGMI_RS07700 yjzB 1429566..1429805 (+) 240 WP_003232972.1 spore coat protein YjzB -
  ACHGMI_RS07705 comZ 1429835..1430026 (-) 192 WP_038828822.1 ComG operon transcriptional repressor ComZ Regulator
  ACHGMI_RS07710 med 1430041..1430994 (-) 954 WP_014476425.1 transcriptional regulator Med Regulator
  ACHGMI_RS07715 - 1431084..1431641 (-) 558 WP_029317608.1 hypothetical protein -
  ACHGMI_RS07720 - 1431723..1432457 (-) 735 WP_032721340.1 hypothetical protein -
  ACHGMI_RS07725 yjzD 1432706..1432891 (+) 186 WP_041345478.1 YjzD family protein -
  ACHGMI_RS07730 yjzC 1432937..1433116 (-) 180 WP_003245356.1 YjzC family protein -
  ACHGMI_RS07735 argF 1433202..1434161 (-) 960 WP_032721338.1 ornithine carbamoyltransferase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35310.84 Da        Isoelectric Point: 4.6031

>NTDB_id=1067572 ACHGMI_RS07710 WP_014476425.1 1430041..1430994(-) (med) [Bacillus subtilis strain AKPS2]
MITRLVMIFSVLLLLSGCGQTPFKGKIEKVGMLFPDTINDLVWGTKGYKGLLNIQSKYNVDVYYKEGVKTEEDIINAIED
FHKRGVNLLYGHGSEYAEVFNLVGEDYPDMEFVISNAKAKADNVTSVHFSGEAMGFFGGMTAAHMSKTNQVGVIASFTWQ
PEVDGFIKGAKYENPDIEVNTKYTDHWDDDTTAVKLYQKMKNEGADVVYPAGDGYNVPVIQQIKKDGLYAIGYVTDQSDL
GENTVLTSTVQNVDKAYEIIAEQFNKGTLEGGDHYYDLNTGVVEMGTFSPLVDKDFQQRIAKLIKTYNKTGELPKNE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=1067572 ACHGMI_RS07710 WP_014476425.1 1430041..1430994(-) (med) [Bacillus subtilis strain AKPS2]
TTGATCACAAGGCTTGTCATGATCTTTTCTGTCCTCCTTTTATTGAGTGGATGTGGACAAACTCCGTTCAAAGGAAAAAT
TGAGAAGGTCGGCATGCTCTTTCCTGATACGATTAATGACCTCGTATGGGGTACAAAAGGGTATAAAGGATTACTGAATA
TACAATCCAAATACAATGTGGACGTCTATTATAAAGAAGGCGTTAAAACAGAAGAAGATATCATAAATGCGATTGAGGAT
TTTCATAAGAGGGGCGTCAATCTGCTCTACGGCCATGGGAGTGAATATGCTGAGGTGTTTAACTTGGTCGGCGAAGATTA
TCCAGATATGGAATTCGTCATTTCCAATGCGAAAGCGAAAGCTGATAATGTAACGAGTGTCCATTTTAGCGGGGAAGCAA
TGGGCTTTTTTGGAGGAATGACTGCTGCCCATATGTCGAAAACGAATCAGGTCGGTGTAATTGCTTCCTTTACGTGGCAG
CCTGAGGTGGACGGTTTTATCAAAGGGGCCAAGTATGAAAATCCGGATATAGAGGTAAATACGAAATATACGGATCATTG
GGATGATGATACAACAGCAGTAAAGCTTTATCAGAAAATGAAGAACGAAGGCGCGGATGTTGTGTATCCCGCCGGAGACG
GGTATAATGTTCCTGTTATTCAGCAAATCAAAAAAGACGGTCTTTATGCCATTGGCTACGTCACAGATCAATCGGATCTG
GGCGAGAATACCGTATTAACCAGCACGGTGCAAAATGTGGACAAGGCCTATGAAATCATTGCTGAACAATTTAATAAAGG
CACCCTTGAGGGCGGCGATCATTACTACGACCTGAATACGGGAGTCGTTGAGATGGGAACATTCAGCCCGCTCGTCGACA
AAGACTTTCAGCAAAGAATCGCCAAGCTGATCAAAACATACAACAAAACAGGCGAGCTGCCAAAAAACGAATAA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0K6M9I2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

99.685

100

0.997

Multiple sequence alignment