Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   ACAM52_RS28350 Genome accession   NZ_AP028663
Coordinates   6096544..6096942 (-) Length   132 a.a.
NCBI ID   WP_021012487.1    Uniprot ID   T1XFY8
Organism   Variovorax sp. V118     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 6091544..6101942
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACAM52_RS28335 (GmRootV118_56220) - 6093259..6095583 (-) 2325 WP_139704803.1 methyl-accepting chemotaxis protein -
  ACAM52_RS28340 (GmRootV118_56230) - 6095626..6096159 (-) 534 WP_062479111.1 chemotaxis protein CheW -
  ACAM52_RS28345 (GmRootV118_56240) - 6096179..6096544 (-) 366 WP_062479114.1 PleD family two-component system response regulator -
  ACAM52_RS28350 (GmRootV118_56250) pilG 6096544..6096942 (-) 399 WP_021012487.1 PleD family two-component system response regulator Regulator
  ACAM52_RS28355 (GmRootV118_56260) - 6097024..6097194 (-) 171 WP_007838397.1 rubredoxin -
  ACAM52_RS28360 (GmRootV118_56270) - 6097306..6098271 (+) 966 WP_062479115.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  ACAM52_RS28365 (GmRootV118_56280) hemL 6098271..6099551 (+) 1281 WP_139704807.1 glutamate-1-semialdehyde 2,1-aminomutase -
  ACAM52_RS28370 (GmRootV118_56290) - 6099568..6100968 (-) 1401 WP_369645196.1 amidase family protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14706.88 Da        Isoelectric Point: 7.3215

>NTDB_id=106756 ACAM52_RS28350 WP_021012487.1 6096544..6096942(-) (pilG) [Variovorax sp. V118]
MGPNGSGYKVLVIDDSNTIRRSAEIFLKQGGHEVLLAEDGFDALSKVNDHKPHLIFCDILMPRLDGYQTCAIIKRNAHFS
NVPVVMLSSKDGVFDKARGRMVGSQDYLTKPFTKDQLLQAVQQFGIVQQEVQ

Nucleotide


Download         Length: 399 bp        

>NTDB_id=106756 ACAM52_RS28350 WP_021012487.1 6096544..6096942(-) (pilG) [Variovorax sp. V118]
ATGGGCCCGAATGGATCTGGTTACAAGGTGCTGGTCATCGATGACAGCAACACCATCCGGCGCAGTGCCGAGATTTTTCT
GAAGCAGGGTGGGCACGAGGTTCTTCTCGCGGAAGACGGCTTCGACGCGCTCTCCAAGGTTAACGACCACAAGCCTCACC
TGATTTTCTGCGACATCCTGATGCCTCGCCTCGACGGCTATCAGACCTGCGCCATCATCAAGCGCAACGCGCATTTCTCC
AATGTCCCGGTCGTCATGCTGTCTTCGAAGGATGGCGTATTCGACAAGGCCCGCGGCCGCATGGTCGGGTCCCAGGACTA
TCTCACCAAGCCATTCACCAAAGACCAGCTGCTGCAGGCCGTGCAGCAGTTTGGCATTGTTCAACAGGAAGTGCAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB T1XFY8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

62.281

86.364

0.538

Multiple sequence alignment