Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   ACHGMI_RS06155 Genome accession   NZ_CP172417
Coordinates   1131888..1132466 (-) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis strain AKPS2     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1126888..1137466
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHGMI_RS06120 lepB 1126895..1127401 (-) 507 WP_003233128.1 signal peptidase I -
  ACHGMI_RS06125 yhjE 1127403..1128026 (-) 624 WP_010886465.1 TVP38/TMEM64 family protein -
  ACHGMI_RS06130 - 1128178..1128549 (+) 372 WP_014476361.1 hypothetical protein -
  ACHGMI_RS06135 yhjC 1128748..1128948 (+) 201 WP_003224377.1 DUF3311 domain-containing protein -
  ACHGMI_RS06140 yhjB 1128945..1130414 (+) 1470 WP_017695341.1 sodium:solute symporter family protein -
  ACHGMI_RS06145 yhjA 1130458..1130727 (-) 270 WP_017695342.1 excalibur calcium-binding domain-containing protein -
  ACHGMI_RS06150 yhxD 1130944..1131843 (+) 900 WP_017695343.1 SDR family oxidoreductase -
  ACHGMI_RS06155 comK 1131888..1132466 (-) 579 WP_003245329.1 competence transcription factor ComK Regulator
  ACHGMI_RS06160 yhzC 1132759..1132992 (+) 234 WP_003233142.1 IDEAL domain-containing protein -
  ACHGMI_RS06165 yhxC 1133020..1133877 (-) 858 WP_003245662.1 SDR family oxidoreductase -
  ACHGMI_RS06170 comW 1133981..1135510 (+) 1530 Protein_1150 FAD-dependent oxidoreductase -
  ACHGMI_RS06175 hemAT 1135766..1136143 (+) 378 Protein_1151 heme-based aerotactic transducer HemAT -
  ACHGMI_RS06180 - 1136150..1136947 (+) 798 WP_413158713.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=1067559 ACHGMI_RS06155 WP_003245329.1 1131888..1132466(-) (comK) [Bacillus subtilis strain AKPS2]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=1067559 ACHGMI_RS06155 WP_003245329.1 1131888..1132466(-) (comK) [Bacillus subtilis strain AKPS2]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATATGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCA
ATCATGGTGGACCCTTCGAATCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCAAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATATCGAACAGCGTGGCTTAGAACCAAGTTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment