Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   ACHGMI_RS05760 Genome accession   NZ_CP172417
Coordinates   1074105..1074899 (+) Length   264 a.a.
NCBI ID   WP_017697678.1    Uniprot ID   -
Organism   Bacillus subtilis strain AKPS2     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 1071471..1078394 1074105..1074899 within 0


Gene organization within MGE regions


Location: 1071471..1078394
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHGMI_RS05735 - 1071471..1071781 (+) 311 Protein_1083 helix-turn-helix domain-containing protein -
  ACHGMI_RS05740 - 1071824..1072672 (-) 849 Protein_1084 IS3 family transposase -
  ACHGMI_RS05745 yfhD 1072683..1072874 (-) 192 WP_014479215.1 YfhD family protein -
  ACHGMI_RS05750 yfhE 1072941..1073051 (-) 111 WP_003223230.1 YfhE family protein -
  ACHGMI_RS05755 yfhF 1073106..1074016 (-) 911 Protein_1087 TIGR01777 family oxidoreductase -
  ACHGMI_RS05760 recX 1074105..1074899 (+) 795 WP_017697678.1 recombination regulator RecX Regulator
  ACHGMI_RS05765 yfhH 1074901..1075215 (+) 315 WP_017697679.1 YfhH family protein -
  ACHGMI_RS05770 yfhI 1075359..1076552 (+) 1194 WP_017697680.1 MFS transporter -
  ACHGMI_RS05775 sspK 1076584..1076736 (-) 153 WP_003223241.1 small, acid-soluble spore protein K -
  ACHGMI_RS05780 yfhJ 1076861..1077130 (+) 270 WP_003243789.1 YfhJ family protein -
  ACHGMI_RS05785 - 1077241..1077551 (+) 311 Protein_1093 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 30998.18 Da        Isoelectric Point: 6.6687

>NTDB_id=1067558 ACHGMI_RS05760 WP_017697678.1 1074105..1074899(+) (recX) [Bacillus subtilis strain AKPS2]
MPFITKISTQKKNTERFNIFLDDKYAFSVDADVLVKFELKKGKELDDLDIIEIQYGDEVKKGFNRALDFLSYRMRSTKEV
EDHLKKKETSPPVIAEVIHRLNDYKYLNDQEFAAAYVSTHKKTNGKGPDVLFRELRAKGIDDDTIKEALSSFSFEDQTRE
AVKHVEKLLKKDKKLSTKELKQRAQLQLQRKGFSFDVISAAMDQIEYENDEDTEKEALRLHAEKAFRKYRYDGSYESAMK
VKQFLFRKGFSLDLIEQFLQEEEN

Nucleotide


Download         Length: 795 bp        

>NTDB_id=1067558 ACHGMI_RS05760 WP_017697678.1 1074105..1074899(+) (recX) [Bacillus subtilis strain AKPS2]
ATGCCGTTTATTACAAAAATATCAACGCAAAAAAAGAATACGGAACGCTTCAATATTTTTCTGGATGATAAATACGCCTT
CAGCGTGGACGCGGATGTGCTCGTGAAATTTGAGCTCAAGAAGGGAAAAGAACTCGATGATCTTGACATCATTGAGATTC
AATACGGCGATGAAGTGAAGAAAGGCTTCAACCGTGCGCTTGACTTTTTATCCTATCGAATGCGGTCGACGAAAGAGGTC
GAGGACCACTTAAAGAAAAAAGAAACCTCGCCCCCCGTCATTGCGGAAGTCATCCATAGGCTTAACGATTACAAGTACTT
AAACGACCAGGAATTTGCCGCAGCCTATGTCAGCACTCACAAAAAAACAAACGGAAAAGGCCCTGATGTTTTGTTCAGAG
AGCTAAGGGCGAAGGGAATTGATGACGATACAATTAAGGAGGCGCTAAGTTCCTTTTCCTTTGAAGATCAGACAAGAGAA
GCGGTCAAGCATGTTGAAAAGCTTCTCAAAAAAGATAAAAAGCTTTCAACGAAAGAACTCAAACAGCGCGCCCAGCTGCA
GCTTCAGCGCAAGGGCTTCTCATTTGATGTTATCAGCGCGGCGATGGATCAGATTGAATATGAAAATGATGAAGACACAG
AGAAAGAAGCGCTGCGCCTTCACGCGGAAAAAGCGTTTAGAAAATACCGCTACGACGGCTCATATGAAAGCGCCATGAAG
GTCAAACAATTTTTATTCCGCAAAGGATTCTCACTCGATTTAATCGAGCAATTTCTGCAGGAAGAGGAGAACTGA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

99.62

99.621

0.992

Multiple sequence alignment