Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   ACHGMI_RS02400 Genome accession   NZ_CP172417
Coordinates   457111..457560 (-) Length   149 a.a.
NCBI ID   WP_017696127.1    Uniprot ID   -
Organism   Bacillus subtilis strain AKPS2     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 452111..462560
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHGMI_RS02365 yckA 452386..453066 (-) 681 WP_017696121.1 amino acid ABC transporter permease -
  ACHGMI_RS02370 yckB 453076..453939 (-) 864 WP_072557073.1 transporter substrate-binding domain-containing protein -
  ACHGMI_RS02375 - 454102..454292 (+) 191 Protein_425 hypothetical protein -
  ACHGMI_RS02380 - 454334..454648 (+) 315 Protein_426 RDD family protein -
  ACHGMI_RS02385 yckD 454730..455062 (+) 333 WP_015252849.1 YckD family protein -
  ACHGMI_RS02390 bglC 455216..456649 (+) 1434 WP_017696125.1 6-phospho-beta-glucosidase -
  ACHGMI_RS02395 nin/comJ 456686..457084 (-) 399 WP_017696126.1 DNA-entry nuclease inhibitor Regulator
  ACHGMI_RS02400 nucA/comI 457111..457560 (-) 450 WP_017696127.1 DNA-entry nuclease Machinery gene
  ACHGMI_RS02405 tlpC 457728..459449 (-) 1722 WP_026113668.1 methyl-accepting chemotaxis protein TlpC -
  ACHGMI_RS02410 hxlB 459560..460117 (-) 558 WP_017696129.1 6-phospho-3-hexuloisomerase -
  ACHGMI_RS02415 hxlA 460123..460755 (-) 633 WP_017696130.1 3-hexulose-6-phosphate synthase -
  ACHGMI_RS02420 hxlR 460987..461349 (+) 363 WP_017696131.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16412.34 Da        Isoelectric Point: 4.5282

>NTDB_id=1067552 ACHGMI_RS02400 WP_017696127.1 457111..457560(-) (nucA/comI) [Bacillus subtilis strain AKPS2]
MNITTDIIKTILLVIVIIAAAAAGLIKGDFFSADQKTSQTKEYDETIAFPSDRYPETAKHIKDAINEGHSEVCTIDRDGA
EERREQSLKDVPSKKGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 450 bp        

>NTDB_id=1067552 ACHGMI_RS02400 WP_017696127.1 457111..457560(-) (nucA/comI) [Bacillus subtilis strain AKPS2]
GTGAACATCACGACGGACATCATAAAAACGATACTTCTCGTCATCGTCATCATAGCAGCTGCAGCTGCCGGCCTGATAAA
AGGAGACTTTTTCTCAGCTGATCAAAAAACGTCTCAAACGAAAGAATATGATGAAACAATCGCCTTCCCATCTGACCGGT
ATCCCGAAACTGCCAAGCATATTAAGGATGCGATAAATGAGGGGCACTCAGAGGTGTGCACTATCGACAGAGACGGAGCT
GAGGAACGCCGCGAGCAATCATTAAAGGACGTACCTTCCAAAAAGGGGTATGACAGAGATGAATGGCCAATGGCCATGTG
CAAAGAAGGCGGTGAGGGAGCTTCTGTAGAATACATTTCTCCCGCTGACAACCGCGGAGCAGGCTCTTGGGTCGGGCATC
AGCTTACCGATTACCCAGACGGCACAAAGGTTTTATTCACAATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(52-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

97.987

100

0.98

Multiple sequence alignment