Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   ACHGMI_RS00280 Genome accession   NZ_CP172417
Coordinates   50286..50576 (-) Length   96 a.a.
NCBI ID   WP_003226760.1    Uniprot ID   A0A7G9PCZ4
Organism   Bacillus subtilis strain AKPS2     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 45286..55576
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHGMI_RS00240 darA 45309..45638 (+) 330 WP_003242755.1 cyclic di-AMP receptor DarA -
  ACHGMI_RS00245 yaaR 45651..46091 (+) 441 WP_009966249.1 YaaR family protein -
  ACHGMI_RS00250 holB 46103..47092 (+) 990 WP_003226770.1 DNA polymerase III subunit delta' -
  ACHGMI_RS00255 ricT 47095..47922 (+) 828 WP_003226767.1 competence/sporulation regulator complex protein RicT -
  ACHGMI_RS00260 yabA 47937..48296 (+) 360 WP_003218308.1 replication initiation-control protein YabA -
  ACHGMI_RS00265 trmNF 48355..49098 (+) 744 WP_003244526.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  ACHGMI_RS00270 yazA 49085..49384 (+) 300 WP_003242983.1 GIY-YIG nuclease family protein -
  ACHGMI_RS00275 rsmI 49359..50237 (+) 879 WP_017696383.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  ACHGMI_RS00280 abrB 50286..50576 (-) 291 WP_003226760.1 transition state genes transcriptional regulator AbrB Regulator
  ACHGMI_RS00285 metG 51071..53065 (+) 1995 WP_017696382.1 methionine--tRNA ligase -
  ACHGMI_RS00290 dayD 53144..53911 (+) 768 WP_017696381.1 TatD family hydrolase -
  ACHGMI_RS00295 yabE 54067..55380 (+) 1314 WP_015715099.1 ubiquitin-like domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10772.62 Da        Isoelectric Point: 6.3482

>NTDB_id=1067546 ACHGMI_RS00280 WP_003226760.1 50286..50576(-) (abrB) [Bacillus subtilis strain AKPS2]
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNLK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=1067546 ACHGMI_RS00280 WP_003226760.1 50286..50576(-) (abrB) [Bacillus subtilis strain AKPS2]
ATGTTTATGAAATCTACTGGTATTGTACGTAAAGTTGATGAATTAGGACGTGTAGTTATTCCTATCGAACTGCGTCGTAC
TCTTGGAATCGCAGAAAAAGATGCTCTTGAAATCTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGTAAAGAAGGC
GCTGAGCAAATCATCAGCGAAATCCAAAACCAGCTTCAAAACCTTAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G9PCZ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment