Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   NSU12_RS06260 Genome accession   NZ_CP172407
Coordinates   1312801..1314618 (+) Length   605 a.a.
NCBI ID   WP_396234584.1    Uniprot ID   -
Organism   Caldifermentibacillus hisashii strain FSL W8-0985     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1307801..1319618
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSU12_RS06240 (NSU12_06240) trpS 1308209..1309195 (-) 987 WP_343127598.1 tryptophan--tRNA ligase -
  NSU12_RS06245 (NSU12_06245) spxA 1309925..1310320 (+) 396 WP_034769143.1 transcriptional regulator SpxA -
  NSU12_RS06250 (NSU12_06250) mecA 1310669..1311334 (+) 666 WP_343127599.1 adaptor protein MecA -
  NSU12_RS06255 (NSU12_06255) - 1311503..1312699 (+) 1197 WP_034769147.1 competence protein CoiA -
  NSU12_RS06260 (NSU12_06260) pepF 1312801..1314618 (+) 1818 WP_396234584.1 oligoendopeptidase F Regulator
  NSU12_RS06265 (NSU12_06265) - 1315528..1316550 (-) 1023 WP_235369782.1 ClpXP adapter SpxH family protein -
  NSU12_RS06270 (NSU12_06270) - 1316547..1316957 (-) 411 WP_034769151.1 globin -
  NSU12_RS06275 (NSU12_06275) - 1317209..1317820 (-) 612 WP_108897804.1 lytic transglycosylase domain-containing protein -
  NSU12_RS06280 (NSU12_06280) - 1317843..1318427 (-) 585 WP_343127601.1 CYTH domain-containing protein -
  NSU12_RS06285 (NSU12_06285) - 1318783..1319409 (+) 627 WP_095142212.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 69961.89 Da        Isoelectric Point: 4.8668

>NTDB_id=1067486 NSU12_RS06260 WP_396234584.1 1312801..1314618(+) (pepF) [Caldifermentibacillus hisashii strain FSL W8-0985]
MSTEKAVKKLPARNEIPVKDTWALENIFATDEKWKEEFEQIKAIIPKAFEFQGKLGENADVLYEALQYQDEVMMRLGKLY
TYAHMRYDQDTTNSFYQGMNDQARNLYTQAASAFSFVVPELLAIDENKIRQFLTEKEELKLYEHALEEINLQRPHVLSPE
VEAILAQSTEVTDAPSNTFGMLNNADLEFPSIVDENGEEVEITHGRYIRFLESADRRVRKDAFHALYETYGKFRNTFAST
LSGQVKRNNFYANVRKYKSAREAALSANNIPESVYDNLVETINKNLPLLHRYVALRKKVLGLDELHMYDLYTPLVKDVKM
EVTFEEAKDIVLKGLAPMGEEYLSVLKEGFANRWVDVHENKGKRSGAYSSGAYGTDPYILLNWQDNVNNLFTLAHEFGHS
VHSYYTRKYQPFPYGDYSIFVAEVASTCNENLLSEYLLKTLDDDRKRLYILNNYLETFRGTVFRQTMFAEFEHDIHIRSQ
KGEALTAELLTNIYYDLNKKYFGDDVVIDEEIGLEWARIPHFYYNYYVYQYATGLSASTALSKQILEEGEPAVERYIGYL
KSGSSDYPIEVLKKAGVDMTTAEPIENACKVFEEKLTDMERLLNK

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=1067486 NSU12_RS06260 WP_396234584.1 1312801..1314618(+) (pepF) [Caldifermentibacillus hisashii strain FSL W8-0985]
ATGTCAACAGAAAAAGCAGTAAAAAAACTGCCGGCAAGAAATGAAATCCCGGTAAAGGATACATGGGCACTGGAAAATAT
TTTTGCAACAGACGAAAAATGGAAAGAGGAGTTTGAGCAGATTAAAGCGATAATTCCTAAAGCTTTTGAATTTCAAGGGA
AACTTGGTGAAAATGCTGACGTTTTATATGAAGCATTGCAATATCAAGATGAAGTGATGATGCGACTGGGGAAATTGTAT
ACATATGCCCATATGCGATATGATCAGGATACGACAAATTCTTTCTATCAAGGAATGAATGATCAAGCGAGAAATTTGTA
TACTCAGGCAGCAAGTGCTTTTTCCTTCGTTGTCCCCGAATTACTGGCGATTGATGAGAATAAAATTCGACAGTTTTTAA
CCGAAAAAGAAGAATTAAAGTTATATGAGCATGCTTTGGAAGAAATTAATTTGCAACGTCCGCATGTATTGTCACCTGAA
GTAGAAGCGATTTTAGCCCAAAGTACAGAAGTGACGGATGCGCCGAGTAATACATTCGGCATGCTAAATAACGCAGACTT
GGAGTTTCCATCTATTGTGGATGAAAACGGAGAAGAAGTCGAAATAACGCACGGCCGTTATATTCGCTTTTTAGAAAGTG
CGGATCGCCGTGTGCGAAAAGATGCGTTTCATGCTTTATATGAAACGTATGGGAAATTTCGAAATACGTTTGCGAGTACA
CTAAGCGGACAAGTAAAACGCAATAATTTTTATGCTAATGTCCGTAAATACAAATCGGCACGGGAAGCCGCACTATCCGC
CAACAATATTCCGGAGTCGGTATATGATAATTTAGTGGAAACAATCAATAAAAACTTGCCGCTTCTACACCGTTATGTCG
CATTACGGAAAAAGGTGCTTGGACTTGATGAATTGCATATGTATGATTTGTATACACCGCTTGTTAAAGATGTCAAAATG
GAAGTGACCTTTGAAGAGGCAAAAGATATCGTCTTAAAAGGATTGGCTCCAATGGGGGAAGAATATCTTTCCGTTTTAAA
AGAAGGGTTTGCCAATCGCTGGGTAGATGTCCATGAAAATAAAGGAAAAAGAAGCGGGGCTTACTCATCCGGAGCGTATG
GAACCGATCCGTATATATTGTTAAACTGGCAAGACAATGTCAATAATTTGTTTACCCTTGCCCATGAATTTGGTCATTCG
GTACATAGTTACTATACAAGGAAATACCAACCATTTCCTTATGGCGATTATTCGATTTTTGTTGCCGAAGTTGCCTCCAC
TTGTAATGAAAATTTATTAAGTGAGTATTTGTTAAAAACATTGGACGATGATAGAAAACGGCTGTACATTTTGAATAATT
ATTTGGAAACATTCCGTGGCACGGTATTCCGGCAGACCATGTTTGCTGAATTTGAACATGATATTCACATTCGTTCCCAA
AAAGGGGAAGCATTGACGGCAGAGTTATTGACAAATATTTATTATGATTTGAATAAAAAATATTTTGGTGATGATGTTGT
TATTGACGAGGAAATTGGCTTAGAATGGGCGAGAATTCCGCATTTCTACTACAACTATTATGTTTACCAATATGCAACGG
GCTTAAGTGCATCAACGGCATTGAGTAAACAAATTTTAGAAGAAGGAGAGCCTGCCGTAGAACGATATATCGGTTATTTG
AAATCCGGAAGCTCGGATTATCCAATCGAAGTGTTGAAAAAAGCAGGGGTGGATATGACAACGGCGGAACCAATCGAAAA
TGCCTGCAAAGTTTTTGAAGAGAAATTGACTGATATGGAACGACTTTTAAATAAATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(211-589)

Oligopeptidase F (Peptidase_M3_N)

(120-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

51.265

98.017

0.502

Multiple sequence alignment