Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   NSU12_RS05740 Genome accession   NZ_CP172407
Coordinates   1205733..1206680 (+) Length   315 a.a.
NCBI ID   WP_396234577.1    Uniprot ID   -
Organism   Caldifermentibacillus hisashii strain FSL W8-0985     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1200733..1211680
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NSU12_RS05725 (NSU12_05725) - 1201698..1202732 (-) 1035 WP_034768948.1 NADH:flavin oxidoreductase/NADH oxidase -
  NSU12_RS05730 (NSU12_05730) - 1203108..1203887 (+) 780 WP_396234575.1 EAL domain-containing protein -
  NSU12_RS05735 (NSU12_05735) - 1204315..1205376 (-) 1062 WP_396234576.1 IS30 family transposase -
  NSU12_RS05740 (NSU12_05740) ceuB 1205733..1206680 (+) 948 WP_396234577.1 ABC transporter permease Machinery gene
  NSU12_RS05745 (NSU12_05745) - 1206677..1207627 (+) 951 WP_034768950.1 iron chelate uptake ABC transporter family permease subunit -
  NSU12_RS05750 (NSU12_05750) - 1207621..1208379 (+) 759 WP_034768951.1 ABC transporter ATP-binding protein -
  NSU12_RS05755 (NSU12_05755) - 1208579..1209544 (+) 966 WP_251245533.1 siderophore ABC transporter substrate-binding protein -
  NSU12_RS05760 (NSU12_05760) - 1209814..1210875 (+) 1062 WP_396234578.1 C45 family autoproteolytic acyltransferase/hydolase -

Sequence

Protein


Download         Length: 315 a.a.        Molecular weight: 34596.78 Da        Isoelectric Point: 10.0987

>NTDB_id=1067481 NSU12_RS05740 WP_396234577.1 1205733..1206680(+) (ceuB) [Caldifermentibacillus hisashii strain FSL W8-0985]
MKKRYLLLVLIILSLISLFIGVSDISVMDIFHLTDKQWQILVVSRIPRLISIIVSGASLSIAGLIMQSLSRNKFVSPTTA
GTMDFARLGILIAMIVFAGAGSLSKMFVAFVFALAGTFLFMKILERIKFKDAIFIPLVGLMLGNIVSSIATFFAYQNDLI
QNISSWLIGDFSIILKGNYELIFISVPLLFIAYLYANKFTIAGMGEDFSKSLGLNYRQVVNLGLIIVALITSSVVLTVGV
IPFLGLIIPNVVSIYRGDHLKNSLAPTAILGAIFVLFCDILGRVIIYPYEIPINLTVGVIGSAIFIYLLLRRQAQ

Nucleotide


Download         Length: 948 bp        

>NTDB_id=1067481 NSU12_RS05740 WP_396234577.1 1205733..1206680(+) (ceuB) [Caldifermentibacillus hisashii strain FSL W8-0985]
ATGAAGAAGAGATACCTACTCCTAGTACTGATTATCCTTTCGCTTATATCCCTCTTTATCGGGGTATCAGATATTTCAGT
GATGGATATCTTTCATTTAACAGATAAACAATGGCAAATATTAGTAGTCAGTAGAATTCCAAGGCTAATTAGTATTATTG
TCTCGGGGGCATCACTGAGTATTGCCGGGCTGATTATGCAAAGCTTAAGCCGCAATAAATTCGTCTCACCAACAACAGCG
GGTACGATGGATTTTGCCCGACTGGGAATTCTCATCGCTATGATTGTTTTTGCCGGTGCCGGTTCACTTAGCAAAATGTT
TGTTGCTTTTGTATTCGCTTTAGCAGGGACCTTCCTGTTTATGAAAATCTTAGAAAGAATTAAATTTAAGGATGCGATAT
TTATCCCGCTTGTCGGGTTAATGCTAGGAAATATTGTCAGTTCAATTGCAACATTTTTTGCCTATCAAAATGATTTAATT
CAAAATATCTCATCATGGTTAATTGGTGATTTTTCCATCATTTTAAAAGGAAATTATGAATTAATTTTTATTAGTGTGCC
ACTCTTGTTTATTGCGTATCTTTATGCCAACAAATTTACAATTGCCGGAATGGGGGAGGATTTTTCAAAAAGTCTTGGTT
TAAACTACCGTCAAGTAGTTAATCTCGGTTTAATCATCGTTGCTCTTATTACATCATCGGTTGTCTTAACCGTTGGGGTA
ATCCCATTTTTGGGCCTTATTATTCCTAATGTTGTTTCGATTTATCGAGGCGATCATTTGAAGAATAGTTTAGCCCCAAC
AGCAATTCTTGGTGCCATTTTTGTTCTGTTTTGCGATATTCTCGGTCGAGTGATTATTTATCCGTATGAAATTCCAATCA
ATTTGACAGTAGGTGTTATTGGCAGTGCAATTTTTATTTACTTATTATTGAGGAGACAGGCACAATGA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

54.662

98.73

0.54

Multiple sequence alignment