Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   ACHZDB_RS20940 Genome accession   NZ_CP172406
Coordinates   1118274..1119455 (+) Length   393 a.a.
NCBI ID   WP_079401271.1    Uniprot ID   -
Organism   Vibrio campbellii strain LB503     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1113274..1124455
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHZDB_RS20930 (ACHZDB_20930) - 1115613..1116599 (+) 987 WP_047475933.1 peptidoglycan DD-metalloendopeptidase family protein -
  ACHZDB_RS20935 (ACHZDB_20935) ylqF 1116920..1117864 (+) 945 WP_038891693.1 ribosome biogenesis GTPase YlqF -
  ACHZDB_RS20940 (ACHZDB_20940) cqsA 1118274..1119455 (+) 1182 WP_079401271.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  ACHZDB_RS20945 (ACHZDB_20945) cqsS 1119562..1121607 (-) 2046 WP_045403299.1 response regulator Regulator
  ACHZDB_RS20950 (ACHZDB_20950) - 1121911..1122528 (+) 618 WP_045419587.1 HAD family phosphatase -
  ACHZDB_RS20955 (ACHZDB_20955) - 1122868..1123416 (-) 549 WP_038891691.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 44057.07 Da        Isoelectric Point: 5.9816

>NTDB_id=1067468 ACHZDB_RS20940 WP_079401271.1 1118274..1119455(+) (cqsA) [Vibrio campbellii strain LB503]
MSDKPKTKPLPSFVEERLDFYIQDLIEQNENQKHLVLGKRPQQGAVVMQSNDYLSLSHNLQIQQAHRDAIYEHDDNVVMS
AIFLQDDDSKPAFETQLADYVGMGSCLLSQSGWAANIGLLQTICPPETPVYIDFFAHMSLWEGIRAAGAQAHPFMHNNMN
HLRKQIQRHGSGVIVVDSVYSTIGTIAPLHDIYEMAREFDCALVVDESHSLGTHGPNGSGLVKALELTDQVDFITVSLAK
TFAYRAGAILGPEKLARTLPFVAFPAIFSSTVLPQEIVRLEKTLEVIRSADDKRTMLFNRAKELRTGLKQIGFHIRSESQ
IVALECGSERNTERVRDFLEERNVFGAVFCRPATGKNKNIIRFSINADMTSRDIDHVLTACQEAYNHPELEFA

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=1067468 ACHZDB_RS20940 WP_079401271.1 1118274..1119455(+) (cqsA) [Vibrio campbellii strain LB503]
ATGAGTGATAAACCGAAAACAAAACCACTTCCTTCCTTTGTTGAGGAACGCCTAGACTTTTATATTCAAGATCTGATTGA
GCAGAACGAAAACCAAAAGCACTTGGTATTAGGGAAGCGACCACAACAAGGAGCGGTGGTCATGCAAAGTAACGACTACT
TGTCGTTGTCCCACAATCTACAAATTCAACAGGCACATCGTGATGCTATCTACGAGCACGATGATAACGTCGTCATGTCT
GCGATTTTCTTACAAGATGACGACTCAAAACCTGCATTTGAAACGCAGCTCGCGGATTATGTCGGTATGGGCAGTTGCCT
ATTATCCCAGTCCGGATGGGCAGCCAATATTGGCTTGTTACAAACGATTTGTCCGCCAGAAACACCGGTCTATATCGATT
TCTTTGCACACATGTCTTTGTGGGAAGGGATTCGAGCGGCAGGAGCGCAAGCGCATCCATTCATGCATAACAACATGAAC
CATTTGCGCAAGCAGATACAGCGTCACGGCTCCGGCGTTATCGTTGTGGATTCGGTCTATAGCACGATAGGTACGATCGC
CCCACTCCACGACATCTACGAAATGGCGCGTGAGTTTGATTGTGCTTTGGTGGTCGATGAGTCCCACTCATTAGGCACGC
ATGGGCCAAATGGTTCTGGCTTGGTGAAAGCATTAGAACTCACTGATCAAGTGGATTTCATTACGGTGAGTTTGGCAAAA
ACATTTGCTTATCGGGCTGGGGCGATTCTTGGTCCAGAAAAGTTGGCTAGAACGCTACCCTTTGTCGCATTCCCAGCCAT
CTTTAGTTCGACGGTCCTGCCACAAGAGATCGTTCGACTTGAAAAGACTCTCGAAGTCATTAGAAGCGCAGATGATAAGC
GAACCATGCTGTTCAATCGCGCTAAGGAGCTCAGAACAGGCCTAAAGCAGATTGGCTTTCATATCCGCAGCGAATCGCAA
ATTGTGGCGTTAGAGTGCGGTAGTGAGCGAAATACGGAACGAGTGCGTGACTTCTTAGAAGAACGAAACGTGTTTGGCGC
TGTATTCTGTCGTCCTGCAACGGGCAAGAATAAGAACATTATTCGATTTTCGATCAATGCTGATATGACATCTCGTGACA
TTGACCATGTCTTGACGGCTTGTCAGGAAGCGTATAACCACCCAGAACTAGAATTCGCCTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(47-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

57.179

99.237

0.567

Multiple sequence alignment