Detailed information NTG1067438

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACHZDB_RS07815
• Genome accession: NZ_CP172405
• Coordinates: 1753813..1754799 (-)
• Length: 328 a.a.
• NCBI ID: WP_005425361.1
• Uniprot ID: A7MTT4
• Organism: Vibrio campbellii strain LB503
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1748813..1759799

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACHZDB_RS07800 (ACHZDB_07800)	recA	1749351..1750394 (-)	1044	WP_005436413.1	recombinase RecA	Machinery gene
ACHZDB_RS07805 (ACHZDB_07805)	pncC	1750595..1751077 (-)	483	WP_045384579.1	nicotinamide-nucleotide amidase	-
ACHZDB_RS07810 (ACHZDB_07810)	mutS	1751163..1753724 (+)	2562	WP_399423688.1	DNA mismatch repair protein MutS	-
ACHZDB_RS07815 (ACHZDB_07815)	rpoS	1753813..1754799 (-)	987	WP_005425361.1	RNA polymerase sigma factor RpoS	Regulator
ACHZDB_RS07820 (ACHZDB_07820)	-	1754880..1755803 (-)	924	WP_038891105.1	peptidoglycan DD-metalloendopeptidase family protein	-
ACHZDB_RS07825 (ACHZDB_07825)	-	1755818..1756444 (-)	627	WP_012128909.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
ACHZDB_RS07830 (ACHZDB_07830)	surE	1756444..1757220 (-)	777	WP_005531673.1	5'/3'-nucleotidase SurE	-
ACHZDB_RS07835 (ACHZDB_07835)	truD	1757220..1758263 (-)	1044	WP_399423691.1	tRNA pseudouridine(13) synthase TruD	-
ACHZDB_RS07840 (ACHZDB_07840)	ispF	1758309..1758785 (-)	477	WP_399423693.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACHZDB_RS07845 (ACHZDB_07845)	ispD	1758800..1759510 (-)	711	WP_399423695.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ACHZDB_RS07850 (ACHZDB_07850)	ftsB	1759512..1759793 (-)	282	WP_005452106.1	cell division protein FtsB	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37482.36 Da
• Isoelectric Point: 4.7331

>NTDB_id=1067438 ACHZDB_RS07815 WP_005425361.1 1753813..1754799(-) (rpoS) [Vibrio campbellii strain LB503]
MSISNTVTKVEEFEYDNASTEGIANNELEKTSNRTKTAAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNME
NLFNVEDD

Nucleotide

• Length: 987 bp

>NTDB_id=1067438 ACHZDB_RS07815 WP_005425361.1 1753813..1754799(-) (rpoS) [Vibrio campbellii strain LB503]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTCGAATATGACAATGCATCAACGGAAGGCATTGCTAACAACGA
GCTTGAAAAAACATCCAACCGAACCAAAACAGCAGCACGCGAAGAATTCGACGCGAGCAGCAAGAGCCTAGATGCTACTC
AGCTTTACTTAGGTGAAATTGGTTTTTCACCTCTACTCACGGCAGAAGAAGAAGTACTTTATGCTCGACGTGCGCTGCGT
GGCGATGAAGCTGCTCGCAAACGTATGATCGAAAGTAACTTGCGTCTTGTAGTTAAGATCTCTCGTCGATACAGCAATCG
TGGTCTAGCACTTCTTGATCTCATTGAAGAAGGTAATTTAGGTCTGATTCGTGCGGTAGAGAAGTTTGATCCAGAAAGAG
GCTTCCGTTTCTCAACTTACGCGACGTGGTGGATTCGCCAAACGATCGAACGTGCGTTGATGAATCAAACTCGTACAATC
CGTCTGCCAATTCATGTGGTTAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAGAAGCTCGACCATGA
ACCAACAGCAGAAGAGATTGCTGCACAGTTAGATATCCCAGTAGAAGACGTAAGCAAAATGCTTCGCCTTAATGAGCGCA
TTAGCTCTGTCGATACGCCGATTGGTGGTGACGGCGAGAAAGCGCTACTGGATATTATTCCTGATGCCAACAACTCGGAT
CCTGAAGTTTCCACTCAGGACGATGACATTAAATCTTCATTGATCCATTGGCTAGAAGAGCTGAATCCAAAACAGAAAGA
AGTGCTAGCGCGTCGTTTTGGTCTGCTTGGCTATGAGCCATCAACACTTGAAGAAGTGGGACGTGAGATTGGTCTAACAC
GCGAACGTGTTCGTCAGATCCAGGTGGAAGGTTTACGTCGACTACGCGAGATCTTGATCAAACAAGGTCTGAATATGGAA
AACCTGTTCAACGTTGAAGACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

• Sigma-70 region 2 (Sigma70_r2) (89-158)

3D structure

• AlphaFold DB: A7MTT4

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.881	100	0.857