Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   ACHZDB_RS02030 Genome accession   NZ_CP172405
Coordinates   487618..489159 (-) Length   513 a.a.
NCBI ID   WP_045398542.1    Uniprot ID   -
Organism   Vibrio campbellii strain LB503     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 482618..494159
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHZDB_RS02010 (ACHZDB_02010) - 482633..484054 (-) 1422 WP_399425139.1 lipopolysaccharide biosynthesis protein -
  ACHZDB_RS02015 (ACHZDB_02015) - 484047..485219 (-) 1173 WP_399424788.1 glycosyltransferase family 4 protein -
  ACHZDB_RS02020 (ACHZDB_02020) - 485230..486414 (-) 1185 WP_005427592.1 glycosyltransferase -
  ACHZDB_RS02025 (ACHZDB_02025) - 486567..487643 (-) 1077 WP_399424789.1 glycosyltransferase -
  ACHZDB_RS02030 (ACHZDB_02030) luxO 487618..489159 (-) 1542 WP_045398542.1 sigma-54 dependent transcriptional regulator Regulator
  ACHZDB_RS02035 (ACHZDB_02035) - 489370..489753 (-) 384 WP_233968598.1 Hpt domain-containing protein -
  ACHZDB_RS02040 (ACHZDB_02040) - 489766..490455 (-) 690 WP_005427760.1 AAA family ATPase -
  ACHZDB_RS02045 (ACHZDB_02045) - 490455..492557 (-) 2103 WP_045373956.1 SLBB domain-containing protein -
  ACHZDB_RS02050 (ACHZDB_02050) - 492554..493408 (-) 855 WP_050908985.1 OmpA family protein -
  ACHZDB_RS02055 (ACHZDB_02055) - 493434..493754 (-) 321 WP_005427675.1 STAS domain-containing protein -

Sequence

Protein


Download         Length: 513 a.a.        Molecular weight: 57544.48 Da        Isoelectric Point: 6.1668

>NTDB_id=1067426 ACHZDB_RS02030 WP_045398542.1 487618..489159(-) (luxO) [Vibrio campbellii strain LB503]
MRPRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGREAIQFIEHNKPQLIILDLKLPDMSGEDVLDWINENEVPTSVIIA
TAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRAKLENLVENIQSTFDRHNYHGFIGSSLPMQAVYKTIDAVA
PTSASVFIVGESGTGKEVCAEAVHRQSDRRDKPFIAINCGAIPRDLMESEIFGHVKGAFTGATTDRKGAATLAHGGTLFL
DELCEMELEMQKKLLRFLQTGTYTPLGGTKEMKVDVRIICATNRDPLKEVEEGRFREDLYYRVHVVPIDMPPLRERGSDI
VTLAKHFLLTYAKQDKKKFKHIGNDVQHVIKNYDWPGNVRQLQNIIRNIVVLNDEDKVTLPHLPVQLTRKPKKTPSVSPA
NAESVKETSFITEQTDSVQNEAFPTSEPTSATYSFSEPENQPTISGAQRASVYFNSDGTIRPMWKVEREAIQNAIAYCDG
NVLNAAVMLELSPSTVYRKKQAWEADEANLKQS

Nucleotide


Download         Length: 1542 bp        

>NTDB_id=1067426 ACHZDB_RS02030 WP_045398542.1 487618..489159(-) (luxO) [Vibrio campbellii strain LB503]
ATGAGACCAAGGGTGTTACTGGTAGAGGACTCTACTTCACTAGCCATACTTTATAAGCAGTACGTCAAGGATGAACCTTA
CGACATCTTCCACGTTGAAACTGGACGTGAGGCGATTCAATTCATTGAGCACAACAAACCACAACTTATTATTCTCGACC
TAAAACTTCCAGACATGTCCGGTGAAGACGTTCTTGATTGGATTAATGAGAATGAGGTTCCAACCTCTGTCATCATAGCA
ACGGCGCATGGTAGCGTTGATCTAGCCGTCAACCTGATCCAGAAAGGCGCAGAAGATTTCCTAGAAAAACCCATCAATGC
CGATCGTTTGAAAACCTCCGTTGCCTTGCATTTAAAACGCGCCAAACTAGAAAATCTCGTCGAGAACATTCAATCGACTT
TCGATCGTCACAACTATCACGGATTTATTGGCTCTAGTCTTCCAATGCAGGCGGTTTACAAAACCATTGATGCAGTTGCC
CCGACCTCAGCTAGCGTGTTTATCGTTGGTGAAAGTGGAACGGGTAAAGAAGTGTGTGCCGAAGCGGTTCACCGACAAAG
TGATCGCAGAGACAAGCCATTCATTGCAATTAACTGCGGCGCTATCCCTCGTGATTTGATGGAAAGCGAAATATTTGGCC
ATGTAAAGGGGGCTTTCACTGGCGCTACTACCGATCGTAAAGGTGCAGCGACCCTTGCTCATGGCGGCACACTATTCTTG
GACGAGCTGTGTGAAATGGAGCTAGAGATGCAGAAAAAGTTATTACGCTTTCTGCAAACGGGAACCTACACGCCTCTCGG
GGGCACCAAAGAGATGAAAGTCGATGTTCGTATTATCTGTGCAACCAACCGAGACCCTCTGAAAGAGGTAGAAGAAGGTC
GTTTTCGTGAAGACTTGTATTATCGCGTTCATGTCGTTCCCATCGACATGCCGCCGCTAAGAGAAAGAGGCAGTGACATT
GTCACGCTAGCAAAGCACTTTTTGCTCACTTATGCCAAACAAGATAAGAAGAAGTTCAAACACATCGGTAACGACGTTCA
GCATGTCATTAAAAACTACGACTGGCCAGGGAATGTTCGCCAGCTACAAAACATCATTCGTAACATTGTTGTATTAAATG
ATGAAGATAAGGTCACGCTACCGCACTTGCCTGTTCAACTGACTCGTAAGCCGAAAAAGACGCCTTCTGTATCGCCTGCG
AATGCTGAGAGCGTAAAAGAAACGAGCTTCATTACCGAACAAACCGACTCCGTGCAGAATGAAGCCTTTCCAACCTCGGA
ACCAACAAGCGCCACCTATTCTTTCTCTGAGCCTGAAAACCAACCAACTATCTCTGGAGCACAAAGGGCTTCAGTCTATT
TTAATTCAGACGGCACCATTCGTCCGATGTGGAAAGTCGAACGAGAGGCGATTCAAAACGCAATTGCTTACTGTGATGGT
AACGTACTTAACGCTGCGGTGATGTTGGAACTCAGCCCTTCAACGGTCTACCGCAAAAAACAAGCGTGGGAAGCAGATGA
AGCTAATCTCAAACAATCTTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(143-308)

Bacterial regulatory protein, Fis family (HTH_8)

(463-499)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

49.598

97.076

0.481

Multiple sequence alignment