Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   ACHZDB_RS01520 Genome accession   NZ_CP172405
Coordinates   363215..364636 (-) Length   473 a.a.
NCBI ID   WP_050913411.1    Uniprot ID   -
Organism   Vibrio campbellii strain LB503     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 358215..369636
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHZDB_RS01495 (ACHZDB_01495) purT 358807..359982 (-) 1176 WP_038890349.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  ACHZDB_RS01500 (ACHZDB_01500) - 360190..360888 (+) 699 WP_399424739.1 cytidine deaminase -
  ACHZDB_RS01505 (ACHZDB_01505) cdd 360952..361839 (-) 888 WP_005427951.1 cytidine deaminase -
  ACHZDB_RS01510 (ACHZDB_01510) - 362103..362780 (-) 678 WP_005428010.1 LrgB family protein -
  ACHZDB_RS01515 (ACHZDB_01515) - 362782..363156 (-) 375 WP_012127845.1 CidA/LrgA family protein -
  ACHZDB_RS01520 (ACHZDB_01520) sbcB 363215..364636 (-) 1422 WP_050913411.1 exodeoxyribonuclease I Machinery gene
  ACHZDB_RS01525 (ACHZDB_01525) - 364798..365478 (-) 681 WP_399424740.1 DUF1826 domain-containing protein -
  ACHZDB_RS01530 (ACHZDB_01530) - 365704..367077 (-) 1374 WP_399424741.1 L-cystine transporter -
  ACHZDB_RS01535 (ACHZDB_01535) - 367271..367966 (-) 696 WP_399424742.1 NAD(P)H-binding protein -
  ACHZDB_RS01540 (ACHZDB_01540) - 368632..369243 (+) 612 WP_399424743.1 flavin reductase family protein -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54511.81 Da        Isoelectric Point: 4.9269

>NTDB_id=1067425 ACHZDB_RS01520 WP_050913411.1 363215..364636(-) (sbcB) [Vibrio campbellii strain LB503]
MHQDNQPTFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVMYCRPPADYLPSPEAALITGITPQKAMQEGLPEP
EFIAKIHAELSKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGVEWPENDEGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRNKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELKERLYTKRDELGDLLPVPVKLVHLNKCPILAPAKTLTAENAEV
IGIDRQKCLSNLALLRQHPEIREKLISLFSIEREFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARHYAGTLDEQEQRRWAQHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=1067425 ACHZDB_RS01520 WP_050913411.1 363215..364636(-) (sbcB) [Vibrio campbellii strain LB503]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTTTTTGATTACGAGACTTGGGGAACAAGTCCAGCCAAAGATCGCCCAAG
CCAATTCGCTGGCGTTCGCACTGATGAAAACTTCAATATCATTGGTGAACCTTTGGTCATGTACTGTCGTCCGCCCGCTG
ATTACCTTCCTTCACCAGAAGCCGCTTTAATCACTGGTATTACGCCACAAAAAGCGATGCAAGAAGGCCTACCTGAACCT
GAATTTATCGCTAAGATCCACGCAGAGCTTTCTAAGCCAAATACCACTAGTCTTGGCTACAACAGCATCCGCTTCGATGA
TGAAGTCACACGTTACACCTGTTACCGCAACTTTATCGATCCTTATGCGTGGAGCTGGCAAAACGGTAACTCACGCTGGG
ATTTACTCGATGTAATGCGTGCGTGTCATGCTCTTCGCCCAGAAGGCGTAGAATGGCCAGAAAATGATGAAGGCTTTACA
AGTTTCAAACTTGAACATTTATCCGTAGCAAATGGTATTGAACACAGCAATGCCCACGATGCGATGGCAGACGTGATTGC
AACGATTGAGATGGCGAAGAAAGTCAAAGCCGCTCAACCAAAGCTGTTTGATTACTTTTTCTCGATGCGTAACAAACGCA
AACTGAACGAGTTAGTCGATATTGTTAACATGACGCCATTGATGCACGTGTCGGGCATGTTGGGACGCGAATGCCAATAC
ACCAGTTGGATTGTGCCTGTGGCTTGGCACCCAACCAACAATAACGCTGTTATTACGATTGACTTGGCGAAGGATCCTCA
GCCGATCTTAGAGCTTTCAGCAGAAGAGTTGAAAGAACGTTTGTACACCAAGCGGGACGAATTGGGTGACCTACTGCCTG
TACCCGTTAAGCTCGTGCACCTGAACAAGTGCCCTATCCTCGCGCCTGCTAAGACCCTGACTGCGGAAAATGCGGAAGTT
ATTGGTATCGATCGTCAGAAATGTTTAAGCAATTTAGCCTTGTTACGCCAACACCCAGAAATCCGCGAAAAGCTAATTAG
TCTATTCTCTATTGAACGTGAATTCGAAAAGAGCGACGACGTGGATACACAGCTTTATGACGGTTTCTTCTCTCCTGCAG
ACCGCGCGGCGATGGACATTATTCGTGAAACGGATCCGAATAATCTGGCTGCGTTGGATATTGAGTTTGATGACAAACGT
ATCAAGCCGTTGTTATTCCGTTACCGTGCTCGTCACTATGCTGGCACTCTGGATGAACAAGAACAAAGACGCTGGGCACA
ACATTGTCGCGAAGTGTTCGAAAGCCAGATTGAAGAGTACATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATAGCAATACTAAAATCTGTCTATCGTTATGTAGAGAGCTTAGCCTCCTAA

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(11-190)

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.493

100

0.795

Multiple sequence alignment