Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   ACH6F1_RS07145 Genome accession   NZ_CP172397
Coordinates   1365425..1366393 (+) Length   322 a.a.
NCBI ID   WP_395941531.1    Uniprot ID   -
Organism   Campylobacter coli strain YH506     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1360425..1371393
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6F1_RS07120 (ACH6F1_07110) - 1361281..1362006 (-) 726 WP_134237500.1 phosphatidate cytidylyltransferase -
  ACH6F1_RS07125 (ACH6F1_07115) - 1362015..1362353 (-) 339 WP_002777761.1 hypothetical protein -
  ACH6F1_RS07130 (ACH6F1_07120) - 1362355..1363662 (-) 1308 WP_395941530.1 NFACT RNA binding domain-containing protein -
  ACH6F1_RS07135 (ACH6F1_07125) - 1363725..1364300 (+) 576 WP_002780540.1 molybdenum cofactor guanylyltransferase -
  ACH6F1_RS07140 (ACH6F1_07130) - 1364399..1365292 (+) 894 WP_002777767.1 phospholipase A -
  ACH6F1_RS07145 (ACH6F1_07135) ceuB 1365425..1366393 (+) 969 WP_395941531.1 ABC transporter permease Machinery gene
  ACH6F1_RS07150 (ACH6F1_07140) - 1366386..1367324 (+) 939 WP_002777770.1 iron chelate uptake ABC transporter family permease subunit -
  ACH6F1_RS07155 (ACH6F1_07145) - 1367321..1368076 (+) 756 WP_002777772.1 ABC transporter ATP-binding protein -
  ACH6F1_RS07160 (ACH6F1_07150) - 1368091..1369080 (+) 990 WP_060786294.1 siderophore ABC transporter substrate-binding protein -
  ACH6F1_RS07165 (ACH6F1_07155) - 1369246..1369878 (+) 633 WP_002777778.1 membrane protein -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35523.37 Da        Isoelectric Point: 9.4981

>NTDB_id=1067312 ACH6F1_RS07145 WP_395941531.1 1365425..1366393(+) (ceuB) [Campylobacter coli strain YH506]
MLFKHLFSLNILLILLVVFGIISLFIGVIRINLDDIFSLSTTQLEIILLTKIPRLIAILLTGMSLSICGLIMQQLTQNKF
VSPTTAGTMDCAKFGILISLIFFTGASFFTQTIIASVFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIINAITTFFA
YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIAGMGEDLALNLGVSYNTILFLGLIIVSIITSVV
IVSIGVIPFLGLIIPNLVAIYRGDNLKKNLIYIALCGALFLLICDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKT
YA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=1067312 ACH6F1_RS07145 WP_395941531.1 1365425..1366393(+) (ceuB) [Campylobacter coli strain YH506]
TTGCTTTTTAAACACTTGTTTAGTTTAAATATTCTTTTAATTTTACTTGTTGTTTTTGGAATAATAAGCTTATTTATAGG
GGTTATTCGTATCAATTTAGACGATATTTTTTCACTCAGCACTACCCAGCTCGAAATCATTTTACTTACAAAAATTCCAA
GGCTTATTGCAATTTTACTTACAGGTATGAGTCTTAGTATATGCGGACTCATCATGCAACAACTCACGCAAAATAAATTT
GTTTCTCCAACCACTGCAGGGACTATGGATTGTGCTAAATTTGGCATTTTGATTTCTTTAATATTTTTTACAGGAGCTTC
TTTTTTTACTCAAACTATCATTGCTTCTGTATTTGCACTTTTGGGTTCTTTTATATTTATCCAAATTCTAAGAAAAATTA
AACTTAAAGATGTGATTTTTGTGCCTTTGATAGGATTAATGTTTGGTGGGATTATAAATGCTATAACCACTTTTTTTGCT
TATGCTTTAAATTATATACAAAATATCCAAGGCTGGCTACAGGGCAGTATGGCAAATGTTATGCAGGGAAATTATGAATT
GCTTTATATTTCTTTACCGCTTTTTATACTTGCTTATTTTCTAGCCCATAAAATCACTATAGCAGGTATGGGAGAAGATC
TTGCTTTAAATCTTGGAGTTTCTTATAATACAATCTTATTTTTAGGCTTAATAATAGTTTCTATTATCACTAGCGTAGTG
ATTGTAAGCATTGGAGTTATACCTTTTTTAGGTCTTATCATCCCTAATCTTGTTGCCATTTATCGCGGGGATAATCTTAA
GAAAAATCTTATCTATATAGCATTATGCGGGGCTTTGTTTTTACTTATTTGCGATATTATCTCAAGACTTGTGATTTTTC
CTTTTGAAATGCCTTTGAGTATAACCACAGGTGTTTTGGGCTCTTTAATTTTTATTTTTCTTTTACTCAAAAGGAAAACT
TATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(15-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

89.13

100

0.891

Multiple sequence alignment