Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   ACH6E9_RS06045 Genome accession   NZ_CP172392
Coordinates   1137291..1138235 (+) Length   314 a.a.
NCBI ID   WP_002796919.1    Uniprot ID   -
Organism   Campylobacter coli strain YH507     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1120148..1149064 1137291..1138235 within 0


Gene organization within MGE regions


Location: 1120148..1149064
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6E9_RS05965 (ACH6E9_05970) - 1120148..1121077 (-) 930 WP_002777213.1 glycosyltransferase family 2 protein -
  ACH6E9_RS05970 (ACH6E9_05975) - 1121070..1122146 (-) 1077 WP_002780642.1 glycosyltransferase -
  ACH6E9_RS05975 (ACH6E9_05980) - 1122143..1123843 (-) 1701 WP_058001362.1 ABC transporter ATP-binding protein -
  ACH6E9_RS05980 (ACH6E9_05985) galE 1123837..1124823 (-) 987 WP_002777216.1 UDP-glucose 4-epimerase GalE -
  ACH6E9_RS05985 (ACH6E9_05990) - 1124880..1125671 (-) 792 WP_025443299.1 3'-5' exonuclease -
  ACH6E9_RS05990 (ACH6E9_05995) waaC 1125736..1126764 (+) 1029 WP_002777218.1 lipopolysaccharide heptosyltransferase I -
  ACH6E9_RS05995 (ACH6E9_06000) - 1126757..1127644 (+) 888 WP_002791218.1 lipid A biosynthesis lauroyl acyltransferase -
  ACH6E9_RS06000 (ACH6E9_06005) - 1127641..1129194 (+) 1554 WP_002797724.1 glycosyltransferase -
  ACH6E9_RS06005 (ACH6E9_06010) - 1129191..1130243 (+) 1053 WP_002791222.1 glycosyltransferase family 4 protein -
  ACH6E9_RS06010 (ACH6E9_06015) - 1130240..1131439 (-) 1200 WP_057980448.1 glycosyltransferase family 8 protein -
  ACH6E9_RS06015 (ACH6E9_06020) - 1131567..1132871 (+) 1305 WP_057991290.1 hypothetical protein -
  ACH6E9_RS06020 (ACH6E9_06025) - 1133055..1133693 (+) 639 WP_002782963.1 IS607-like element ISChh1 family transposase -
  ACH6E9_RS06025 (ACH6E9_06030) - 1133680..1134972 (+) 1293 WP_002915795.1 RNA-guided endonuclease TnpB family protein -
  ACH6E9_RS06030 (ACH6E9_06035) - 1135137..1135979 (+) 843 WP_395941719.1 asparagine synthase-related protein -
  ACH6E9_RS06035 (ACH6E9_06040) - 1135982..1136398 (+) 417 WP_002796922.1 adenylyltransferase/cytidyltransferase family protein -
  ACH6E9_RS06040 (ACH6E9_06045) - 1136417..1137232 (-) 816 WP_057991291.1 glycosyltransferase family 2 protein -
  ACH6E9_RS06045 (ACH6E9_06050) waaF 1137291..1138235 (+) 945 WP_002796919.1 lipopolysaccharide heptosyltransferase II Regulator
  ACH6E9_RS06050 (ACH6E9_06055) - 1138218..1139672 (-) 1455 WP_057041880.1 hypothetical protein -
  ACH6E9_RS06055 (ACH6E9_06060) gmhA 1139684..1140244 (-) 561 WP_002796916.1 D-sedoheptulose 7-phosphate isomerase -
  ACH6E9_RS06060 (ACH6E9_06065) rfaE1 1140241..1141626 (-) 1386 WP_157142155.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -
  ACH6E9_RS06065 (ACH6E9_06070) rfaD 1141619..1142572 (-) 954 WP_057991294.1 ADP-glyceromanno-heptose 6-epimerase -
  ACH6E9_RS06070 (ACH6E9_06075) - 1142569..1143132 (-) 564 WP_002801394.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase -
  ACH6E9_RS06075 (ACH6E9_06080) - 1143209..1143508 (+) 300 WP_002777238.1 cytochrome c -
  ACH6E9_RS06080 (ACH6E9_06085) - 1143538..1143738 (-) 201 WP_002777240.1 cbb3-type cytochrome oxidase assembly protein -
  ACH6E9_RS06085 (ACH6E9_06090) - 1143731..1146094 (-) 2364 WP_072216344.1 heavy metal translocating P-type ATPase -
  ACH6E9_RS06090 (ACH6E9_06095) rho 1146207..1147505 (+) 1299 WP_002780613.1 transcription termination factor Rho -
  ACH6E9_RS06095 (ACH6E9_06100) - 1147508..1149064 (+) 1557 WP_002777248.1 DNA polymerase III subunit gamma/tau -

Sequence

Protein


Download         Length: 314 a.a.        Molecular weight: 36158.61 Da        Isoelectric Point: 10.1355

>NTDB_id=1067260 ACH6E9_RS06045 WP_002796919.1 1137291..1138235(+) (waaF) [Campylobacter coli strain YH507]
MKIFIHLPTWLGDAVMASSALYAIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQALSLRKELDKIDLSFT
FRSAFSSKIILHILKTRQRYFFDKNKHKEEHQVLKYLYFIENSLDIKAHSKDLKLPFKLKFQNPIVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHIAAVYKVKTVAIFGPTKFTQTSPWQNENAKLVHLDLACMPCMQKICPLKHHKCMKDLKPEMVLEKLKFDT

Nucleotide


Download         Length: 945 bp        

>NTDB_id=1067260 ACH6E9_RS06045 WP_002796919.1 1137291..1138235(+) (waaF) [Campylobacter coli strain YH507]
ATGAAAATTTTTATACATCTTCCCACTTGGCTAGGCGATGCGGTTATGGCTTCATCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATGCTCAATTTATCCTTTATGGATCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCTCGCTATAAACAAGCCCTATCTTTACGTAAAGAACTTGATAAAATCGATCTTAGCTTCACT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTGCATATTCTTAAAACAAGACAAAGATATTTTTTTGACAAAAATAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAATTCACTAGATATCAAAGCTCATTCTAAGGATTTAA
AACTCCCTTTTAAATTAAAATTTCAAAATCCTATTGTTTTAAAAAATGGCAAAAAAATCTTAGGTTTAAACCCTGGAGCA
AGCTTTGGAAGCGCTAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAGATTTT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTGA
AAAATCTTTGCAACAAAACTACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGCCCTATGCATATAGCTGCGGTTTATAAGGTAAAAACCGTGGCTATTTTTGGCCCTACGAAATTTACCCAAACTTCACC
TTGGCAAAATGAAAACGCAAAATTAGTACACTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAATCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATTTAAAGCCTGAAATGGTTTTAGAAAAATTAAAATTTGATACTTAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(96-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

92.605

99.045

0.917

Multiple sequence alignment