Detailed information
Bioinformatically predicted
Overview
| Name | waaF | Type | Regulator |
| Locus tag | ACH6FV_RS03200 | Genome accession | NZ_CP172391 |
| Coordinates | 637557..638516 (-) | Length | 319 a.a. |
| NCBI ID | WP_002790123.1 | Uniprot ID | - |
| Organism | Campylobacter coli strain YH508 | ||
| Function | repress natural transformation (predicted from homology) Competence regulation |
||
Genomic Context
Location: 632557..643516
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACH6FV_RS03170 (ACH6FV_03170) | - | 633522..633722 (+) | 201 | WP_002777240.1 | cbb3-type cytochrome oxidase assembly protein | - |
| ACH6FV_RS03175 (ACH6FV_03175) | - | 633752..634051 (-) | 300 | WP_002794349.1 | cytochrome c | - |
| ACH6FV_RS03180 (ACH6FV_03180) | - | 634128..634691 (+) | 564 | WP_032685630.1 | D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase | - |
| ACH6FV_RS03185 (ACH6FV_03185) | rfaD | 634688..635641 (+) | 954 | WP_349325231.1 | ADP-glyceromanno-heptose 6-epimerase | - |
| ACH6FV_RS03190 (ACH6FV_03190) | rfaE1 | 635634..637019 (+) | 1386 | WP_002790121.1 | D-glycero-beta-D-manno-heptose-7-phosphate kinase | - |
| ACH6FV_RS03195 (ACH6FV_03195) | gmhA | 637016..637576 (+) | 561 | WP_002780618.1 | D-sedoheptulose 7-phosphate isomerase | - |
| ACH6FV_RS03200 (ACH6FV_03200) | waaF | 637557..638516 (-) | 960 | WP_002790123.1 | lipopolysaccharide heptosyltransferase II | Regulator |
| ACH6FV_RS03205 (ACH6FV_03205) | - | 638575..639393 (+) | 819 | WP_002780620.1 | glycosyltransferase family 2 protein | - |
| ACH6FV_RS03210 (ACH6FV_03210) | - | 639489..640532 (+) | 1044 | WP_168207695.1 | polysaccharide pyruvyl transferase family protein | - |
| ACH6FV_RS03215 (ACH6FV_03215) | - | 641019..641363 (+) | 345 | WP_002780624.1 | hypothetical protein | - |
| ACH6FV_RS03220 (ACH6FV_03220) | - | 641373..641561 (+) | 189 | WP_032682936.1 | sulfatase-like hydrolase/transferase | - |
| ACH6FV_RS03225 (ACH6FV_03225) | - | 641566..642342 (+) | 777 | WP_050560283.1 | sulfatase-like hydrolase/transferase | - |
| ACH6FV_RS03230 (ACH6FV_03230) | - | 642439..642711 (+) | 273 | WP_002780626.1 | hypothetical protein | - |
| ACH6FV_RS03235 (ACH6FV_03235) | - | 642897..643031 (+) | 135 | WP_002780627.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 319 a.a. Molecular weight: 36735.26 Da Isoelectric Point: 10.3041
>NTDB_id=1067241 ACH6FV_RS03200 WP_002790123.1 637557..638516(-) (waaF) [Campylobacter coli strain YH508]
MKIFIHLPTWLGDAVMASPALYAIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLNTKAHFKDLKLPFKLKFQNPLILRNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEIVIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISAVYKVKTVAIFGPTKFTQTSPWQNENAKLVYLDLACMPCMQKTCPLKHHKCMKDLKPQRVIEEARNLLKNPHL
MKIFIHLPTWLGDAVMASPALYAIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLNTKAHFKDLKLPFKLKFQNPLILRNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEIVIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISAVYKVKTVAIFGPTKFTQTSPWQNENAKLVYLDLACMPCMQKTCPLKHHKCMKDLKPQRVIEEARNLLKNPHL
Nucleotide
Download Length: 960 bp
>NTDB_id=1067241 ACH6FV_RS03200 WP_002790123.1 637557..638516(-) (waaF) [Campylobacter coli strain YH508]
ATGAAAATTTTTATACATCTTCCCACTTGGCTAGGCGACGCAGTGATGGCTTCACCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATGCCCAATTTATCCTTTATGGATCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCCCGCTACAAACAAGCCCTATCTTTACGCAAAGAACTTGGTAAAATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCCAAGATTATCTTACATATTCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAATACAAAAGCTCATTTTAAGGACTTAA
AACTTCCATTTAAGCTAAAATTTCAAAACCCTCTTATCTTAAGAAATGGTAAAAAAATTCTAGGACTCAACCCTGGTGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAAATTGT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGACCTATGCACATAAGTGCGGTTTATAAGGTAAAAACCGTGGCTATTTTTGGCCCTACGAAATTTACCCAAACTTCACC
TTGGCAAAATGAAAACGCAAAATTAGTGTATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGTCCTTTAAAAC
ACCACAAATGTATGAAAGATTTAAAGCCTCAAAGGGTTATAGAAGAAGCTAGAAATTTACTTAAAAACCCTCATCTATGA
ATGAAAATTTTTATACATCTTCCCACTTGGCTAGGCGACGCAGTGATGGCTTCACCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATGCCCAATTTATCCTTTATGGATCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCCCGCTACAAACAAGCCCTATCTTTACGCAAAGAACTTGGTAAAATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCCAAGATTATCTTACATATTCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAATACAAAAGCTCATTTTAAGGACTTAA
AACTTCCATTTAAGCTAAAATTTCAAAACCCTCTTATCTTAAGAAATGGTAAAAAAATTCTAGGACTCAACCCTGGTGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAAATTGT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGACCTATGCACATAAGTGCGGTTTATAAGGTAAAAACCGTGGCTATTTTTGGCCCTACGAAATTTACCCAAACTTCACC
TTGGCAAAATGAAAACGCAAAATTAGTGTATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGTCCTTTAAAAC
ACCACAAATGTATGAAAGATTTAAAGCCTCAAAGGGTTATAGAAGAAGCTAGAAATTTACTTAAAAACCCTCATCTATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| waaF | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
94.671 |
100 |
0.947 |